View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18768_high_2 (Length: 448)
Name: NF18768_high_2
Description: NF18768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18768_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 38936461 - 38936033
Alignment:
| Q |
1 |
caacaacctttcaggagaaattcctcaaaatcttcaaaagttagcatcattggagatcttcaatgtctcacacaacaatctatctggaacaatcccacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936461 |
caacaacctttcaggagaaattcctcaaaatcttcaaaagttagcatcattggagatcttcaatgtctcacacaacaatctatctggaacaatcccacaa |
38936362 |
T |
|
| Q |
101 |
tccttttcaagtatgcccagccttcaatcagtggatttttcttacaataacttgtcaggttcgatcccaacaggtggtgtttttcaaacagaaactgctg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936361 |
tccttttcaagtatgcccagccttcaatcagtggatttttcttacaataacttgtcaggttcgatcccaacaggtggtgtttttcaaacagaaactgctg |
38936262 |
T |
|
| Q |
201 |
aagcttttgtcggaaatgcaggtttgtgtggtgaggtaaaaggattaacatgtgctacaatattgtctcaagaacattctggaggggccaacaaaaaggt |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936261 |
aagcttttgttggaaatgcaggtttgtgtggtgaggtaaaaggattaaaatgtgctacaatattgtctcaagaacattctggaggggccaacaaaaaggt |
38936162 |
T |
|
| Q |
301 |
acttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgttggaattctactatttcaaaggaaagctaaaaaacttagtgaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38936161 |
acttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgttggaattctactatttcaaaggaaagctaaaaaacttagtgaa |
38936062 |
T |
|
| Q |
401 |
gaatcccaaagcattgaagataatgatca |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
38936061 |
gaatcccaaagcattgaagataatgatca |
38936033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 39306491 - 39306919
Alignment:
| Q |
1 |
caacaacctttcaggagaaattcctcaaaatcttcaaaagttagcatcattggagatcttcaatgtctcacacaacaatctatctggaacaatcccacaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39306491 |
caacaatctttcaggagaaattcctcaaaaccttcaaaagttagcaacattggagattctcaatgtctcacacaacaatctatctggaacaatcccacaa |
39306590 |
T |
|
| Q |
101 |
tccttttcaagtatgcccagccttcaatcagtggatttttcttacaataacttgtcaggttcgatcccaacaggtggtgtttttcaaacagaaactgctg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || |||||||| |||| |
|
|
| T |
39306591 |
tccttttcaagtatgatcagccttcaatctgtggatttttcttacaaccacttgtcaggtttgataccaacaggtggtgttttccagacagaaaccgctg |
39306690 |
T |
|
| Q |
201 |
aagcttttgtcggaaatgcaggtttgtgtggtgaggtaaaaggattaacatgtgctacaatattgtctcaagaacattctggaggggccaacaaaaaggt |
300 |
Q |
| |
|
|||||||||| || || |||||||||||||||| ||||||||||||| |||||| || ||| ||||||| || ||||||||| ||||||| |||||| |
|
|
| T |
39306691 |
aagcttttgttgggaacccaggtttgtgtggtgatgtaaaaggattaagatgtgccactgtatcgtctcaaaaaggttctggaggagccaacagaaaggt |
39306790 |
T |
|
| Q |
301 |
acttcttggtgttacgatatcatttggtggagtactatttgtagggatgattggtgttggaattctactatttcaaaggaaagctaaaaaacttagtgaa |
400 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||| |||||| || |||||| |||| |||| ||||||| ||||| |
|
|
| T |
39306791 |
acttcttggtgttactatatcagttggtggagtactatttatagggatgatttgtgctggaatcttaatatttcgaaggcaagccaaaaaacacggtgaa |
39306890 |
T |
|
| Q |
401 |
gaatcccaaagcattgaagataatgatca |
429 |
Q |
| |
|
|||||| ||| |||||||||||||||||| |
|
|
| T |
39306891 |
gaatccaaaaacattgaagataatgatca |
39306919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University