View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18768_high_6 (Length: 338)
Name: NF18768_high_6
Description: NF18768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18768_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42156743 - 42156429
Alignment:
| Q |
1 |
actctttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156743 |
actctttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgt |
42156644 |
T |
|
| Q |
101 |
cctgagagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttatagatatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156643 |
cctgagagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttatagatatgttt |
42156544 |
T |
|
| Q |
201 |
cagttcctgaatttgttgatttctttcattcatttcatattggagaagaaattgaggcagaacttaaggttccttataataagagacaaactcacccagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42156543 |
cagttcctgaatttgttgatttctttcattcatttcatattggagaagaaattgcggcagaacttaaggttccttataataagagacaaactcacccagc |
42156444 |
T |
|
| Q |
301 |
tgcgttagtgaaaga |
315 |
Q |
| |
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||||||||||||||| |
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| T |
42156443 |
tgcgttagtgaaaga |
42156429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 315
Target Start/End: Complemental strand, 42144795 - 42144482
Alignment:
| Q |
2 |
ctctttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtc |
101 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||| || || ||||||||||| ||||||||||| |||||||||| |
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| T |
42144795 |
ctctttgacgacattattcttctttcagaaggtcaaatagtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacaggctttaggtgtc |
42144696 |
T |
|
| Q |
102 |
ctgagagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttatagatatgtttc |
201 |
Q |
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| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42144695 |
cagagagaaaaggtgttgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaagagatgaaccttatagatatgtttc |
42144596 |
T |
|
| Q |
202 |
agttcctgaatttgttgatttctttcattcatttcatattggagaagaaattgaggcagaacttaaggttccttataataagagacaaactcacccagct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
42144595 |
agttcctgaatttgttgatttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaactcacccagca |
42144496 |
T |
|
| Q |
302 |
gcgttagtgaaaga |
315 |
Q |
| |
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|| ||||| ||||| |
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| T |
42144495 |
gcattagtcaaaga |
42144482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 42175911 - 42175601
Alignment:
| Q |
5 |
tttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || || ||||||||||| |||||||| || |||||||| || | |
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| T |
42175911 |
tttgacgacattattctactttcagaaggtcaaattgtatatcaaggtccgcgtgaaaatgtgctagagttcttcgaatacacgggctttaggtgcccag |
42175812 |
T |
|
| Q |
105 |
agagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttatagatatgtttcagt |
204 |
Q |
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|||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
42175811 |
agagaaaatgtgttgctgatttcttacaagaagtaacatccaagaaagaccaacaacaatactggtttagaagagatgaaccttatagatatgtttcagt |
42175712 |
T |
|
| Q |
205 |
tcctgaatttgttgatttctttcattcatttcatattggagaagaaattgaggcagaacttaaggttccttataataagagacaaactcacccagctgcg |
304 |
Q |
| |
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|||||||||| |||| |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||| |
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| T |
42175711 |
tcctgaattttttgagttctttcattcatttcatattggagaggaaattgcggcagagattaaggttccttataataagagtcaaacccacccagctgca |
42175612 |
T |
|
| Q |
305 |
ttagtgaaaga |
315 |
Q |
| |
|
||||||||||| |
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|
| T |
42175611 |
ttagtgaaaga |
42175601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 42135663 - 42135349
Alignment:
| Q |
1 |
actctttgacgacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgt |
100 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| || || || || |||| |||||| || ||||| | ||| |
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|
| T |
42135663 |
actctttgatgacattatcctactttcagaaggtcaaattgtataccaaggaccacgcgaaaatgtgttacagttttttgaaaccatcggtttcaaatgt |
42135564 |
T |
|
| Q |
101 |
cctgagagaaaagggattgctgatttcttacaagaagtaacatccaagaaagatcaacaacaatactggtttaaaatagatgaaccttatagatatgttt |
200 |
Q |
| |
|
||| |||||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||| || |||| ||||||||| |||||||| |
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| T |
42135563 |
cctccaagaaaaggagtagctgattttttacaagaagtaacatccaaaaaagaccaacaacaatattggtttagaagagataaaccttataaatatgttt |
42135464 |
T |
|
| Q |
201 |
cagttcctgaatttgttgatttctttcattcatttcatattggagaagaaattgaggcagaacttaaggttccttataataagagacaaactcacccagc |
300 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||| |||||||| | ||| | | || |||| ||||| ||| |||||||||||||||||||||| |
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| T |
42135463 |
cagtttctgaatttgttgattcctttgattcatttcacattggagagcagcttgtgacggagcttatggttcggtatgataagagacaaactcacccagc |
42135364 |
T |
|
| Q |
301 |
tgcgttagtgaaaga |
315 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
42135363 |
tgcattagtgaaaga |
42135349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 2151513 - 2151409
Alignment:
| Q |
35 |
caaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctgagagaaaagggattgctgatttcttacaag |
134 |
Q |
| |
|
|||||||| |||||||||||| | || | ||||||||||| ||||||| |||||||| | |||||| || |||||||| |||||||||||||||||| |
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|
| T |
2151513 |
caaattgtgtatcaaggaccaagagaatatgtactagagttttttgaatcgacaggtttcaagtgtcccgaaagaaaaggcgttgctgatttcttacaag |
2151414 |
T |
|
| Q |
135 |
aagta |
139 |
Q |
| |
|
||||| |
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|
| T |
2151413 |
aagta |
2151409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 2163787 - 2163683
Alignment:
| Q |
35 |
caaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctgagagaaaagggattgctgatttcttacaag |
134 |
Q |
| |
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|||||||| |||||||||||| | || || ||||||||||| || || | | || || | ||||||||| |||||||| |||||||||||||||||| |
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| T |
2163787 |
caaattgtgtatcaaggaccaagagaaaatgtactagagtttttcgagtcaatgggattcaagtgtcctgaaagaaaaggagttgctgatttcttacaag |
2163688 |
T |
|
| Q |
135 |
aagta |
139 |
Q |
| |
|
||||| |
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|
| T |
2163687 |
aagta |
2163683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 34144516 - 34144416
Alignment:
| Q |
11 |
gacattattctactttcagaaggtcaaattgtatatcaaggaccacgtgagaacgtactagagttctttgaatacacaggttttaggtgtcctgagagaa |
110 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||| ||||| |||| ||| || || || ||||||||||||||| ||||||||| ||||| ||||||| |
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| T |
34144516 |
gacattatcctacttt-agaagctcaaattgtattccaaggtccacatgaaaatgtgcttcagttctttgaatacataggttttagatgtcccgagagaa |
34144418 |
T |
|
| Q |
111 |
aa |
112 |
Q |
| |
|
|| |
|
|
| T |
34144417 |
aa |
34144416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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