View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18768_low_1 (Length: 469)
Name: NF18768_low_1
Description: NF18768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18768_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 9 - 454
Target Start/End: Complemental strand, 155669 - 155223
Alignment:
| Q |
9 |
cacagataaataaaagtaagagtattt-acttactcctggtttcttaggcgcaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttt |
107 |
Q |
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| T |
155669 |
cacaaataaataaaagtaagagtattttacttactcctggtttcttaggcacaactagcaaatgcctgagtccaagctcccgaaacagaagagcagcttt |
155570 |
T |
|
| Q |
108 |
tgcaggagacattgtttcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttccatctcctcttgtgaaatgtccaaatcc |
207 |
Q |
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| T |
155569 |
tgcaagagacattgtttcaacaacagtatatggagaagtatttgtgattggatgaagatcaacatacatttccatctcctcttgtgaaatgtccaaatcc |
155470 |
T |
|
| Q |
208 |
tccacccttatccctcttcccaaacctggttttgcaaaatcccttgccttaaccttgttcactatagtagaccctgtcatcaccctctccctagtgaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
155469 |
tccacccttatccctcttcccaaacctggttttgcaaaatcccttgccttaaccttgttcacaatagtagaccctgtcatcaccctctccctagtgaaca |
155370 |
T |
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| Q |
308 |
atgtcttgtgcttgagaagcaccaaaagatgagacctcaacaccaacccacacaactccggagcatccgtcaaaggaggctcatcaactactggaaatcc |
407 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
155369 |
atgtcttgtgcttgagaagcacccaaagatgagacctcaacaccaacccacacaactcgggagcatccgtcaaaggaggctcatcaactactggaaatcc |
155270 |
T |
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| Q |
408 |
gtgatgttctgtcactttcaaagcgtgcaatatattccccacttttt |
454 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
155269 |
gtgatgttctgtcactttcaaagcgtgcaatatattccccacttttt |
155223 |
T |
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