View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18768_low_3 (Length: 427)
Name: NF18768_low_3
Description: NF18768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18768_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 5810218 - 5810614
Alignment:
| Q |
17 |
agttggcaaagggtgtaagtaagaaaattggatgtttcattttgttagacaaccattattcttcaaatcaaacatggaagtagttttatgttgtccagta |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
5810218 |
agttggcaaagggtgtaagtaagaaaattggatgtttcattttgttagacaaccaat---cttcaaatcaaacatggaagtagttttatgttgtccagta |
5810314 |
T |
|
| Q |
117 |
agtctttcattttccaacaaattaaaagcacctaaagcaacacataaaatatnnnnnnnnnntgtgaaaagttgaaaacaaacaacaagttgtgattttc |
216 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5810315 |
agtctttcattttccaaaaaattaaaagcacctagagcaacacataaaatataaaaaaaa--tgtgaaaagttgaaaacaaacaacaagttgtgattttc |
5810412 |
T |
|
| Q |
217 |
tacagaaattatagacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaataatagaatcatagctttcc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5810413 |
tacagaaattatagacaaaataaacattattcagaacttcaatatattattgcaacattggctactaaaaaaggatgaaataatagaatcatagctttca |
5810512 |
T |
|
| Q |
317 |
attcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctctcttcatc |
416 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
5810513 |
attcattaaccataaagaaacatactgtatcagggcgcatgaacaggctattccatgctctggtatctccactagcttcggctactttcctttcttcttc |
5810612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 201 - 418
Target Start/End: Complemental strand, 38604444 - 38604227
Alignment:
| Q |
201 |
acaagttgtgattttctac-agaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaat |
297 |
Q |
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||||||||||| ||||||| ||||| ||| ||| |||| || ||||||||||| | ||||| | |||| ||| |||||||||| |||||||||||||| |
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| T |
38604444 |
acaagttgtgactttctactagaaaatatgaagataaaacaagcattattcagagcatcaatgaactattgcaaaattggctactcaaaaaggatgaaat |
38604345 |
T |
|
| Q |
298 |
aatagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcgg |
397 |
Q |
| |
|
|||| ||||||||||||| ||| | | ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| | |
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| T |
38604344 |
aatataatcatagctttcaatt---tcatcataaggaaacatactgtatcctggcgcatgaacagactattccatgctctggtatctcctttagcttcag |
38604248 |
T |
|
| Q |
398 |
ctactttcctctcttcatctc |
418 |
Q |
| |
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|| ||||||| ||||| |||| |
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| T |
38604247 |
ctgctttcctttcttcctctc |
38604227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 201 - 418
Target Start/End: Original strand, 37740501 - 37740717
Alignment:
| Q |
201 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
298 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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| T |
37740501 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37740600 |
T |
|
| Q |
299 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
398 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
37740601 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37740697 |
T |
|
| Q |
399 |
tactttcctctcttcatctc |
418 |
Q |
| |
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| ||||||| ||||| |||| |
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| T |
37740698 |
tgctttcctttcttcttctc |
37740717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 201 - 413
Target Start/End: Original strand, 37756712 - 37756923
Alignment:
| Q |
201 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
298 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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|
| T |
37756712 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37756811 |
T |
|
| Q |
299 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
398 |
Q |
| |
|
||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
37756812 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37756908 |
T |
|
| Q |
399 |
tactttcctctcttc |
413 |
Q |
| |
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| T |
37756909 |
tgctttcctttcttc |
37756923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 201 - 413
Target Start/End: Original strand, 37762460 - 37762671
Alignment:
| Q |
201 |
acaagttgtgattttctacagaaattat--agacaaaataaacattattcagaacttcaatatattatttcaacattggctactaaaaaaggatgaaata |
298 |
Q |
| |
|
||||||||||| |||||| ||||| ||| ||| ||||||| ||||||||| ||| | ||| | |||| || |||||| ||| ||||||||||||||| |
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| T |
37762460 |
acaagttgtgactttctatagaaaatatgaagataaaataagcattattcaaaacatgaatgaactattgaaaaattggcaactcaaaaaggatgaaata |
37762559 |
T |
|
| Q |
299 |
atagaatcatagctttccattcattaaccataaagaaacatactgtatcagagcgcatgaacaggctattccatgctctggtatctccactagcttcggc |
398 |
Q |
| |
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||||||||||| |||| ||| | | | ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| || |
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| T |
37762560 |
atagaatcataaatttcaatt---tcatcgtaaggaaacatactgtatcagggcgcatgaacagactattccatgctctggtatctcctttagcttcagc |
37762656 |
T |
|
| Q |
399 |
tactttcctctcttc |
413 |
Q |
| |
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| ||||||| ||||| |
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| T |
37762657 |
tgctttcctttcttc |
37762671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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