View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18768_low_4 (Length: 377)
Name: NF18768_low_4
Description: NF18768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18768_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 42577817 - 42578166
Alignment:
| Q |
19 |
acactgcctaaaaagattatggtgagtttagttcctttaactggttgtttatgttatgctactcattttagcatttgttcattatttttacgggagcatt |
118 |
Q |
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| T |
42577817 |
acactgcctaaaaagattatggtgagtttagttcatttaactggttgtttatgttatgctactcattttagcatttgttcattatttttaccggagcatt |
42577916 |
T |
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| Q |
119 |
tcgatagttctttttgatgcatgcattaaaatcttgtggtgcaaatagtggataagcagcacaaaactaagttatgaaaagaatgtgcctgtttagatgg |
218 |
Q |
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| T |
42577917 |
tcgatagttctttttgatgcatgcattaaaatcttgtggtgcaaatagtggataagcagcactaaactaagttatgaaaagaatgtgcctgtttagttgg |
42578016 |
T |
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| Q |
219 |
agcttagagacttggtagaaggataatgggtccagcttataagttgatagttctgtttgagtccaattatattaagattagggagaaataaagaaaggaa |
318 |
Q |
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| T |
42578017 |
agcttagagacttgttagaaggataattggtccagcttataagttgatagttctgtttgagtccaattatattaagattagggagaaataaagaaaggaa |
42578116 |
T |
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| Q |
319 |
agagatgagcttaatatacaatgtgataggataagcagattttcttcatc |
368 |
Q |
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| T |
42578117 |
agagatgagcttaatatacaatgtgataggataagcagattttcttcatc |
42578166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 42570631 - 42570809
Alignment:
| Q |
19 |
acactgcctaaaaagattatggtgagtttagttcctttaactggttgtttatgttatgctactcattttagcatttgttcattatttttacgggagcatt |
118 |
Q |
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| T |
42570631 |
acactgcctaagaaaattatggtgagtttagtacctttaactggttgtttatgctatgttactca-tttagcattggttcattattttaataggagcatt |
42570729 |
T |
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| Q |
119 |
tcgatagttctttttgatgcatgcattaaaatcttgtggtgcaaatagtggataagcagcacaaaactaagttatgaaaagaatgtgcctgttt |
212 |
Q |
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| T |
42570730 |
tcgatagttctgttttaggcatgcattaaaatct--------------tggataagtagcacaaaactaagttctgaaaagaatgtgcctgttt |
42570809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 31 - 93
Target Start/End: Original strand, 42573015 - 42573077
Alignment:
| Q |
31 |
aagattatggtgagtttagttcctttaactggttgtttatgttatgctactcattttagcatt |
93 |
Q |
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| T |
42573015 |
aagattatggtgagtttagttccttgaactggttgtttgtgctatgctactcattttagcatt |
42573077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 42570831 - 42570866
Alignment:
| Q |
254 |
cttataagttgatagttctgtttgagtccaattata |
289 |
Q |
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| T |
42570831 |
cttataatttgatagttctgtttgagtccaattata |
42570866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 42594509 - 42594572
Alignment:
| Q |
22 |
ctgcctaaaaagattatggtgagtttagttcctttaactggttgtttatgttatgctactcatt |
85 |
Q |
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| T |
42594509 |
ctgcctaaaaacgttgtggtgagtttagttccttgaattggttgtttatactatgctagtcatt |
42594572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 42608469 - 42608517
Alignment:
| Q |
254 |
cttataagttgatagttctgtttgagtccaattatattaagattaggga |
302 |
Q |
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| T |
42608469 |
cttataacttgatagttctgtttgaatctagttatattaagatgaggga |
42608517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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