View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18768_low_8 (Length: 317)
Name: NF18768_low_8
Description: NF18768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18768_low_8 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 103453 - 103742
Alignment:
| Q |
18 |
aaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103453 |
aaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagag |
103552 |
T |
|
| Q |
118 |
aagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaatgtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103553 |
aagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaatgtgt |
103652 |
T |
|
| Q |
218 |
ggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccccatcctttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
103653 |
ggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccccatcctttg |
103742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 164419 - 164702
Alignment:
| Q |
18 |
aaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagag |
117 |
Q |
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|||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||| |
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| T |
164419 |
aaaatgtggtgttattgtcggttagtatacatgccgatgtcttacttgtacgggaagaggtttgtaggtcctatcacaccactcatcttacagttgagag |
164518 |
T |
|
| Q |
118 |
aagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaatgtgt |
217 |
Q |
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||||||||||||| || ||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| || |||||||||| | ||||||||| |
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| T |
164519 |
aagaactccatacccaaccttatgaaaaaactaattggacgaaatcacgtcacctatgtgcaaaggttagagtctttatctttaattgatcacaatgtgt |
164618 |
T |
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| Q |
218 |
ggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctcacaggaagatatttactatccccatcctttg |
307 |
Q |
| |
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| | |||||| |||| |||| | |||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
164619 |
gaaattacacatcctttttaac------ataggagggataatgatccattttatgtctcataggaagatctttactatccccatcctttg |
164702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 13052378 - 13052551
Alignment:
| Q |
18 |
aaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagag |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
13052378 |
aaaatgtggtgttattgtcgattgacatacatgcctatgtcttacttgtacgggaagaggtttgtgggtcgaatcacaccactcatcttacagttgagag |
13052477 |
T |
|
| Q |
118 |
aagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtc |
191 |
Q |
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||||| | |||| ||| ||||| |||||| || | ||| ||||||||||||| ||||||||||||||||||| |
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| T |
13052478 |
aagaaattcataatcaaccttacgaaaaagttgattggttcaaatcacgtcaccaatgtgcaaaggtgagagtc |
13052551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 92848 - 92566
Alignment:
| Q |
18 |
aaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagag |
117 |
Q |
| |
|
||||||||||| ||||||||| |||||||| | || ||||||||||||||||| ||||| ||||| ||||| |||||||||||| ||||||||||||||| |
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| T |
92848 |
aaaatgtggtgctattgtcgactggtatacttaccgatgtcttacttgtacggaaagaggtttgtcggtccaatcacaccactcgtcttacagttgagag |
92749 |
T |
|
| Q |
118 |
aagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgagagtcattgtctttaattgtttacaatgtgt |
217 |
Q |
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||||||| |||||||| ||||||| ||| ||||||||| ||| |||| |||||||||||||||||||| || |||||| ||||| | ||| ||| | |
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| T |
92748 |
aagaacttcatactcaaccttatggtaaagttaactggaaaaaagcacgccacctatgtgcaaaggtgaggctctttgtctctaattcatgacagtgtat |
92649 |
T |
|
| Q |
218 |
ggatttacacttcctctttatcatgataataggagggataatgatctattttatgtctc-acaggaagatatttactatccccatcctttg |
307 |
Q |
| |
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| |||||||| | ||||||| | || ||||||||||| || |||||||| ||| |||||||||||| |||||||| ||||||||| |
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| T |
92648 |
gaatttacacat-ctctttaac------gtatgagggataatgttccattttatg-ctcaacaggaagatatctactatcctcatcctttg |
92566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 12137844 - 12137677
Alignment:
| Q |
18 |
aaaatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagag |
117 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||| ||||||||||||||||||| |
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| T |
12137844 |
aaaatgtggtgttactgtcgattggtatacatgcctatgtcttacttgtatggaaagagatttgtgggttcaatcacaccgctcatcttacagttgagag |
12137745 |
T |
|
| Q |
118 |
aagaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtg |
185 |
Q |
| |
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|||||||| ||||| | ||||||| |||| |||| |||| ||| ||||||||| ||||| |||||| |
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| T |
12137744 |
aagaactctatactgaaccttatgcaaaagttaattggaaaaaagcacgtcaccagtgtgcgaaggtg |
12137677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 5722638 - 5722471
Alignment:
| Q |
20 |
aatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagagaa |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | |||||| ||||||||||| |
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| T |
5722638 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgatcttaaagttgagagaa |
5722539 |
T |
|
| Q |
120 |
gaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
187 |
Q |
| |
|
||||||| ||| | |||||||||||| |||| ||| ||| |||||||||||||||||||||||| |
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| T |
5722538 |
gaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgtcacctatgtgcaaaggtgag |
5722471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 5670524 - 5670357
Alignment:
| Q |
20 |
aatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagagaa |
119 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||||||| ||||||||||| |
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| T |
5670524 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatgggaagaggtttgtcggtccaataacaccactcatcttaaagttgagagaa |
5670425 |
T |
|
| Q |
120 |
gaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
187 |
Q |
| |
|
||||||| ||| | | |||||||||| |||| ||| ||| ||| || ||||||||||||||||| |
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|
| T |
5670424 |
gaactccttacagaacattatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5670357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 5692298 - 5692131
Alignment:
| Q |
20 |
aatgtggtgttattgtcgattggtatacatgcctatgtcttacttgtacgggaagagatttgtgggtccgatcacaccactcatcttacagttgagagaa |
119 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||||||||| | | |||| ||||||||||| |
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| T |
5692298 |
aatgttgtgttattgtcgattggtatacatgcctatgtcttacttgtatggaaagaggtttgtcggtccaatcacaccattgaccttaaagttgagagaa |
5692199 |
T |
|
| Q |
120 |
gaactccatactcagccttatgaaaaaattaactggacgaaatcacgtcacctatgtgcaaaggtgag |
187 |
Q |
| |
|
||||||| ||| | |||||||||||| |||| ||| ||| ||| || ||||||||||||||||| |
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|
| T |
5692198 |
gaactccttacagaaccttatgaaaaagttaattggcaaaaagtacgccatctatgtgcaaaggtgag |
5692131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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