View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_high_1 (Length: 783)

Name: NF18769_high_1
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_high_1
NF18769_high_1
[»] chr7 (10 HSPs)
chr7 (12-565)||(12732740-12733293)
chr7 (447-536)||(46251420-46251509)
chr7 (424-520)||(12732254-12732350)
chr7 (412-498)||(5004904-5004990)
chr7 (417-483)||(30402835-30402901)
chr7 (446-483)||(30915763-30915800)
chr7 (446-521)||(35771203-35771278)
chr7 (24-69)||(1782560-1782606)
chr7 (446-496)||(27599240-27599290)
chr7 (446-495)||(32548643-32548692)
[»] chr3 (16 HSPs)
chr3 (417-616)||(55125176-55125375)
chr3 (712-767)||(55125026-55125081)
chr3 (416-528)||(35458846-35458958)
chr3 (417-483)||(44406941-44407007)
chr3 (416-486)||(52399007-52399077)
chr3 (416-496)||(52398322-52398402)
chr3 (15-70)||(3646588-3646643)
chr3 (417-520)||(46187832-46187935)
chr3 (414-493)||(47481213-47481292)
chr3 (417-487)||(43768026-43768095)
chr3 (417-529)||(45529383-45529495)
chr3 (447-493)||(11267658-11267704)
chr3 (424-537)||(33454873-33454985)
chr3 (448-529)||(41639073-41639154)
chr3 (417-486)||(44022066-44022135)
chr3 (447-484)||(50305449-50305486)
[»] chr1 (15 HSPs)
chr1 (418-609)||(9429766-9429960)
chr1 (417-505)||(43316357-43316445)
chr1 (416-496)||(50950144-50950224)
chr1 (416-496)||(7463414-7463494)
chr1 (417-493)||(29334214-29334290)
chr1 (416-486)||(40028761-40028831)
chr1 (417-496)||(11426853-11426932)
chr1 (417-496)||(37889879-37889958)
chr1 (416-490)||(11031430-11031504)
chr1 (9-70)||(23190780-23190841)
chr1 (417-496)||(11032188-11032267)
chr1 (475-527)||(9430498-9430550)
chr1 (446-497)||(31788244-31788295)
chr1 (467-520)||(29148884-29148937)
chr1 (417-466)||(36272546-36272595)
[»] chr4 (17 HSPs)
chr4 (518-609)||(6679563-6679659)
chr4 (417-523)||(43079160-43079266)
chr4 (9-74)||(15366231-15366296)
chr4 (424-527)||(6680280-6680383)
chr4 (419-528)||(54453502-54453611)
chr4 (490-535)||(13857172-13857217)
chr4 (490-535)||(13868701-13868746)
chr4 (446-486)||(33409416-33409456)
chr4 (446-483)||(232031-232068)
chr4 (424-486)||(17512185-17512247)
chr4 (446-496)||(23383339-23383389)
chr4 (417-487)||(23425185-23425255)
chr4 (424-494)||(33370846-33370916)
chr4 (417-487)||(39429225-39429295)
chr4 (447-497)||(50710385-50710435)
chr4 (9-70)||(4746725-4746786)
chr4 (417-490)||(30808621-30808694)
[»] scaffold1551 (1 HSPs)
scaffold1551 (9-74)||(1003-1068)
[»] chr5 (13 HSPs)
chr5 (447-529)||(25074971-25075053)
chr5 (447-529)||(25132940-25133022)
chr5 (417-527)||(6381505-6381615)
chr5 (417-529)||(25074283-25074395)
chr5 (417-529)||(25132252-25132364)
chr5 (446-496)||(6804802-6804852)
chr5 (417-483)||(18152670-18152736)
chr5 (417-465)||(1970514-1970562)
chr5 (446-497)||(17767559-17767610)
chr5 (412-483)||(32943512-32943583)
chr5 (446-496)||(26712357-26712407)
chr5 (446-496)||(26982095-26982145)
chr5 (446-495)||(32944454-32944503)
[»] chr8 (8 HSPs)
chr8 (23-70)||(16226928-16226975)
chr8 (417-487)||(42345394-42345464)
chr8 (446-483)||(40450968-40451005)
chr8 (416-487)||(7054089-7054160)
chr8 (447-494)||(36936389-36936436)
chr8 (447-494)||(36936668-36936715)
chr8 (424-483)||(37562302-37562361)
chr8 (447-529)||(38572252-38572334)
[»] scaffold0103 (1 HSPs)
scaffold0103 (9-70)||(16137-16198)
[»] chr2 (13 HSPs)
chr2 (9-70)||(16934078-16934139)
chr2 (446-496)||(41768712-41768762)
chr2 (446-483)||(36390986-36391023)
chr2 (446-549)||(4386126-4386227)
chr2 (424-488)||(34617660-34617724)
chr2 (446-493)||(7868113-7868160)
chr2 (456-523)||(9370997-9371064)
chr2 (23-70)||(13073247-13073294)
chr2 (11-70)||(19593923-19593982)
chr2 (16-70)||(23958982-23959036)
chr2 (446-496)||(37545705-37545755)
chr2 (417-486)||(20991287-20991356)
chr2 (9-66)||(42255854-42255911)
[»] chr6 (4 HSPs)
chr6 (411-494)||(29290117-29290200)
chr6 (30-70)||(29031551-29031591)
chr6 (16-70)||(19741340-19741394)
chr6 (16-70)||(21737121-21737175)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 565
Target Start/End: Complemental strand, 12733293 - 12732740
Alignment:
Q  12 ataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaactctttagtgggtgtgtaaaccatcaacaataaaaaattga 111  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  12733293 ataggaagtcacttggatgtgtccttgagcatttgtaattagttgtgattatcgtgaaactctttagtgggtgtgtaaatcatcaacaataaaaaattga 12733194  T
Q  112 atttttcaaacaattctcagaaacagtagattaaatcaatttaaattgaattaaactaacagaagggataagaagaagaagaccaacaaatttatggcaa 211  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||| || || |||||||| ||||||| |||||||||||||||    
T  12733193 atttttcaaacaattctcagaaacagtaaattaaatcaatttaaattgaatttaaatgacataaaggttaagaagatgaagacccacaaatttatggcaa 12733094  T
Q  212 gtaaaaaatacacccacaactttcataactgtaatcagtcgaaagaatctaaaattcatgcggaacctgataacttaataaactaatcaccctacaannn 311  Q
    ||| || ||||  ||||||||| |||||||||||| |||||| |||||  |||||||||| ||| | |||||| |||||||||||||||||||||||       
T  12733093 gtataacatactaccacaacttgcataactgtaataagtcgatagaatagaaaattcatgaggatcatgataaattaataaactaatcaccctacaattt 12732994  T
Q  312 nnnnctcatggtttacaggttctctcctctcacatttaccgagaaggcaatggctgcgcagataagtttgttagtctcggtcacactctctcaggtaagg 411  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12732993 ttttctcatggtttacaggttctctcctctcacatttaccgagaaggcaatggctgcgcagataagtttgttagtctcggtcacactctctcaggtaagg 12732894  T
Q  412 tttggggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtaca 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12732893 tttggggtggcatttagcatggaaatggacaatagtttcccaccatgagaaagtaaattttatccattagattaagtaaagaacattgtcttatggtaca 12732794  T
Q  512 ctctcaacactagattatcttttttccctatcttccaccatcatctcttcttca 565  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||    
T  12732793 ctctcaacactagattatcttttttccctatcttccaacatcatctctccttca 12732740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 447 - 536
Target Start/End: Original strand, 46251420 - 46251509
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacactagattatctttttt 536  Q
    |||||||||||||||||||  |||||| |||||||||||| |||||| ||   | ||||  |||||||||| ||||||||||||| ||||    
T  46251420 tttcccaccatgggaaagttgattttagccattagattaattaaagagcacaatattatcatacactctcaccactagattatctctttt 46251509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 424 - 520
Target Start/End: Original strand, 12732254 - 12732350
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaaca 520  Q
    |||||||||| || ||  || ||||||||||||||||||||||||| ||  ||||||||| | ||||||||||| || ||||  || ||||||||||    
T  12732254 tttagcatgggaaagggaaagagtttcccaccatgggaaagtaaatattgaccattagatcatgtaaagaacatagttttatcatagactctcaaca 12732350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 5004990 - 5004904
Alignment:
Q  412 tttggggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacatt 498  Q
    |||| |||| |||||||||| | |||||| | | ||||||||||| |||||||||||||||| | ||||||| || | |||||||||    
T  5004990 tttgaggtgacatttagcataggaatggatagttgtttcccaccaagggaaagtaaattttacctattagatcaaatgaagaacatt 5004904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 30402901 - 30402835
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagat 483  Q
    ||||||||||||||||  |||||| | |  ||| ||||||||||||||||||||||| |||||||||    
T  30402901 ggtggcatttagcatgagaatggatagttattttccaccatgggaaagtaaattttacccattagat 30402835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 30915763 - 30915800
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||||||||||||||||||||||||||| |||||||||    
T  30915763 gtttcccaccatgggaaagtaaattttacccattagat 30915800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 521
Target Start/End: Complemental strand, 35771278 - 35771203
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacac 521  Q
    |||||||||||||||||||  ||||| | |  |||||||||||| ||| ||| |||||||  ||||||||||||||    
T  35771278 gtttcccaccatgggaaagctaatttaaacggttagattaagtatagagcatagtcttattatacactctcaacac 35771203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 1782606 - 1782560
Alignment:
Q  24 ttggatgtgtccttgagcattta-taattagttgtgattatagtgaa 69  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||    
T  1782606 ttggttgtgtccttgagcattttgtaattagttgtgattatagtgaa 1782560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 27599240 - 27599290
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||| || |||  |||||||||||||||| |||||    
T  27599240 gtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaaca 27599290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 32548692 - 32548643
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaac 495  Q
    |||||||||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  32548692 gtttcccaccatgggaaagttaatgttagccattagatcaagtagagaac 32548643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 184; Significance: 4e-99; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 417 - 616
Target Start/End: Complemental strand, 55125375 - 55125176
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55125375 ggtggcatttagcatggaaatggacaatagtttcccaccatagaaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 55125276  T
Q  517 aacactagattatcttttttccctatcttccaccatcatctcttcttcattgttcaatcttcagccagaacagaaaaactctccttcacatgtcttccat 616  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  55125275 aacactagattatcttttttccctatcttccaccatcatctctccttcattgttcaatcttcaaccagaacagaaaaactctccttcacatgtcttccat 55125176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 712 - 767
Target Start/End: Complemental strand, 55125081 - 55125026
Alignment:
Q  712 ctgatgaacacattttacaagacatttattcaactgtccatagtgatgctaagttt 767  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  55125081 ctgatgaacacattttacaagagatttattcaactgtccacagtgatgctaagttt 55125026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 528
Target Start/End: Original strand, 35458846 - 35458958
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactct 515  Q
    ||||| ||||||| |||| |||||| | | |||||||||||| ||||||||||||| ||||||| |||||| ||||||||| | ||||||  ||| |  |    
T  35458846 gggtgccatttagaatgggaatggatagttgtttcccaccataggaaagtaaatttaatccatttgattaaataaagaacactttcttatcatactcctt 35458945  T
Q  516 caacactagatta 528  Q
    |||||||||||||    
T  35458946 caacactagatta 35458958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 417 - 483
Target Start/End: Complemental strand, 44407007 - 44406941
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagat 483  Q
    ||||||||||||||||| ||| || | | |||||||||||||||||||||||||||| |||||||||    
T  44407007 ggtggcatttagcatgggaatagatagttgtttcccaccatgggaaagtaaattttacccattagat 44406941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 416 - 486
Target Start/End: Complemental strand, 52399077 - 52399007
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaa 486  Q
    ||||||||||||||||||||| ||  || ||||||||| ||||||||||||||||||  ||||||||||||    
T  52399077 gggtggcatttagcatggaaaagggaaagagtttcccatcatgggaaagtaaattttgaccattagattaa 52399007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 52398322 - 52398402
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    ||||| ||||||| ||||||| ||  || ||||||||||||||| ||||||||||||| |||||||||||| || ||||||    
T  52398322 gggtgccatttagaatggaaaagggaaagagtttcccaccatggaaaagtaaattttaaccattagattaaatagagaaca 52398402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 3646643 - 3646588
Alignment:
Q  15 ggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||||    
T  3646643 ggaagtctcttggaagtgtccttgagcatttttaactagttgtgattatagtgaaa 3646588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 46187935 - 46187832
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||  ||||| || ||| || | |||| |||||||||| ||| ||||||| ||| ||||||||| |||||||||||||||||  || ||||||    
T  46187935 ggtggcatttcacatgggaaaggataaaactttctcaccatgggagagtcaattttaaccactagattaagcaaagaacattgtcttatcatagactctc 46187836  T
Q  517 aaca 520  Q
    ||||    
T  46187835 aaca 46187832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 47481292 - 47481213
Alignment:
Q  414 tggggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaaga 493  Q
    |||||||||||||||||||  |||||| | | |||| | ||||| | ||||||||||||||||||||||| || ||||||    
T  47481292 tggggtggcatttagcatgagaatggatagttgttttctaccatagaaaagtaaattttatccattagatcaaataaaga 47481213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 43768026 - 43768095
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaag 487  Q
    ||||||||||||||||| |||||| | | ||||||||||||||||||||   ||||| |||||||||||||    
T  43768026 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagt-ttttttaaccattagattaag 43768095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 529
Target Start/End: Complemental strand, 45529495 - 45529383
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||| ||| | || | | || |||||||| | |||||||||| ||||||| ||| || || |||||||||||||| | ||||  || ||||||    
T  45529495 ggtggcatttaacataggaaagcataaaagtttcccgctatgggaaagttaattttaaccactaaatcaagtaaagaacattatgttatcatagactctc 45529396  T
Q  517 aacactagattat 529  Q
    ||||||| |||||    
T  45529395 aacactacattat 45529383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 493
Target Start/End: Complemental strand, 11267704 - 11267658
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaaga 493  Q
    ||||| ||||||||||| ||||||||| |||||||||||| ||||||    
T  11267704 tttcctaccatgggaaaataaattttaaccattagattaaataaaga 11267658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 424 - 537
Target Start/End: Original strand, 33454873 - 33454985
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacacta 523  Q
    |||||||||| || ||| ||| ||||||||||||| ||||||   ||||| |  |||||||||||||||||||   | ||||  | ||||||||||||||    
T  33454873 tttagcatgggaaaggaaaattgtttcccaccatgagaaagttttttttaacggttagattaagtaaagaacacattgttatcatgcactctcaacacta 33454972  T
Q  524 gattatcttttttc 537  Q
     |||| ||||||||    
T  33454973 tatta-cttttttc 33454985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 448 - 529
Target Start/End: Complemental strand, 41639154 - 41639073
Alignment:
Q  448 ttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacactagattat 529  Q
    |||||||||||||||| |  |||||| |||||||||||| |  ||||||   ||||||||||||||   |||||||||||||    
T  41639154 ttcccaccatgggaaaatttattttagccattagattaatttgagaacacaatcttatggtacacttctaacactagattat 41639073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 44022135 - 44022066
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaa 486  Q
    |||||||||||||||||||| ||| | | |||| |||||||||||||  ||| |||  ||||||||||||    
T  44022135 ggtggcatttagcatggaaaaggagagttgttttccaccatgggaaaaaaaaatttgaccattagattaa 44022066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 447 - 484
Target Start/End: Complemental strand, 50305486 - 50305449
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagatt 484  Q
    ||||||||||||| ||||||||||||| ||||||||||    
T  50305486 tttcccaccatggaaaagtaaattttaaccattagatt 50305449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 88; Significance: 7e-42; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 418 - 609
Target Start/End: Original strand, 9429766 - 9429960
Alignment:
Q  418 gtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctca 517  Q
    ||||||| ||||||||||| | | || || |||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||    
T  9429766 gtggcatatagcatggaaaagaagaagagattcccatcatgagaaagtaaattttatccattaaattaagtaaagaacattgtcttatggtacattttca 9429865  T
Q  518 acactagattatcttttttccctatcttccaccatcatctcttcttcattg-----ttcaatcttcagcc-agaacagaaaaactctccttcacatgt 609  Q
    ||||||||||   ||||||||||||||||||| ||||||||| |||| |||     ||||||||||| || |||||| ||||||||| ||||||||||    
T  9429866 acactagatt---ttttttccctatcttccactatcatctctccttcgttgccatattcaatcttcaaccaagaacataaaaactcttcttcacatgt 9429960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 417 - 505
Target Start/End: Original strand, 43316357 - 43316445
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttat 505  Q
    ||||||||||||||||| |||||| | | |||||||||||||||||||||||||||||||||| ||| || ||||||| ||| ||||||    
T  43316357 ggtggcatttagcatgggaatggatagttgtttcccaccatgggaaagtaaattttatccatttgatcaaataaagaatattttcttat 43316445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 50950144 - 50950224
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    ||||||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||| | |||| |||||||||    
T  50950144 gggtggcatttagcatggaaatggatagttgtttcccaccatggaaaagtaaattttatccatttggttaaataaagaaca 50950224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 496
Target Start/End: Original strand, 7463414 - 7463494
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||||||  ||||||  |||||||||||| |||||||||    
T  7463414 gggtggcatttagcatggaaaaggaaaagagtttcccaccatgggaaagctaattttgaccattagattaaataaagaaca 7463494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 493
Target Start/End: Original strand, 29334214 - 29334290
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaaga 493  Q
    ||||||||||||||||| |||||| | | |||||||||||||||||||||||||||| ||||||||| || ||||||    
T  29334214 ggtggcatttagcatgggaatggatagttgtttcccaccatgggaaagtaaattttacccattagatcaaataaaga 29334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 416 - 486
Target Start/End: Complemental strand, 40028831 - 40028761
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaa 486  Q
    |||||||||||||||||  |||||| | | |||||||||||| ||||||||||||||||||||||||||||    
T  40028831 gggtggcatttagcatgagaatggatagttgtttcccaccataggaaagtaaattttatccattagattaa 40028761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 11426853 - 11426932
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||| ||  || ||||||||||||||||||||  ||||||  |||||||||||| |||||||||    
T  11426853 ggtggcatttagcatggaaaagggaaagagtttcccaccatgggaaagctaattttgaccattagattaactaaagaaca 11426932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 37889879 - 37889958
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||| ||| ||  || ||||||||||||||||||||  ||||||  |||||||||||| |||||||||    
T  37889879 ggtggcatttagcatgaaaaagggaaagagtttcccaccatgggaaagcgaattttgaccattagattaactaaagaaca 37889958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 416 - 490
Target Start/End: Original strand, 11031430 - 11031504
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaa 490  Q
    |||||||||||| ||||| || ||  |||||||||||||||||||||||| || |||  ||||||||||||||||    
T  11031430 gggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttaaatttgaccattagattaagtaa 11031504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 23190841 - 23190780
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||| ||||||| ||||| |||||||||||| | || ||||||||||||||||||||||||    
T  23190841 agcattggaagtctcttggttgtgtccttgagtaattgtaattagttgtgattatagtgaaa 23190780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 417 - 496
Target Start/End: Complemental strand, 11032267 - 11032188
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    ||||||||||| ||||| || ||  ||||||||||||||||||||||||  | |||  |||||||||||||||| |||||    
T  11032267 ggtggcatttaacatgggaaaggggaatagtttcccaccatgggaaagttgaatttgaccattagattaagtaatgaaca 11032188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 475 - 527
Target Start/End: Complemental strand, 9430550 - 9430498
Alignment:
Q  475 ccattagattaagtaaagaacattgtcttatggtacactctcaacactagatt 527  Q
    ||||||||||||||||||||||| || ||||  || |||||||||||||||||    
T  9430550 ccattagattaagtaaagaacatagttttatcctaaactctcaacactagatt 9430498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 31788295 - 31788244
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacat 497  Q
    |||||||||||||||||||| ||||||| ||||||||| || || |||||||    
T  31788295 gtttcccaccatgggaaagttaattttaaccattagataaaatagagaacat 31788244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 467 - 520
Target Start/End: Complemental strand, 29148937 - 29148884
Alignment:
Q  467 aattttatccattagattaagtaaagaacattgtcttatggtacactctcaaca 520  Q
    ||||||| ||| ||||||||| |||||||||||||||||  || ||||||||||    
T  29148937 aattttaaccactagattaagcaaagaacattgtcttatcatagactctcaaca 29148884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 466
Target Start/End: Complemental strand, 36272595 - 36272546
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagta 466  Q
    ||||||||||||||||| |||||  | | |||||||||||||||||||||    
T  36272595 ggtggcatttagcatgggaatgggaacttgtttcccaccatgggaaagta 36272546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 9e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 518 - 609
Target Start/End: Original strand, 6679563 - 6679659
Alignment:
Q  518 acactagattatcttttttccctatcttccaccatcatctcttcttcat-----tgttcaatcttcagccagaacagaaaaactctccttcacatgt 609  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||     ||||||||||||| |||||||||||||||||| ||||||||||    
T  6679563 acaccagattatcttttttccctatcttccaccatcatctctccttcattgtcatgttcaatcttcaaccagaacagaaaaactcttcttcacatgt 6679659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 417 - 523
Target Start/End: Original strand, 43079160 - 43079266
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||  ||||| || |||||||  ||| |||| |||||||||| ||||||||||||||||| ||||||||||||| |||||||  | |||||||    
T  43079160 ggtggcatttcacatgggaaaggacaatctttttccacaatgggaaagttaattttatccattagatcaagtaaagaacatagtcttatcatgcactctc 43079259  T
Q  517 aacacta 523  Q
    |||||||    
T  43079260 aacacta 43079266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 15366231 - 15366296
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaactct 74  Q
    |||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  15366231 agcataggaaatcacttggctgtgtccttgagcatttgtaattagttgtgattatagtgaaactct 15366296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 424 - 527
Target Start/End: Complemental strand, 6680383 - 6680280
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacacta 523  Q
    |||||||||| || ||  || |||||| |||||||||||||||||| ||  ||||||||||||||||||||||| || ||||  || | |||||||||||    
T  6680383 tttagcatgggaaagggaaagagtttctcaccatgggaaagtaaatattgaccattagattaagtaaagaacatagttttatcatagattctcaacacta 6680284  T
Q  524 gatt 527  Q
    ||||    
T  6680283 gatt 6680280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 419 - 528
Target Start/End: Complemental strand, 54453611 - 54453502
Alignment:
Q  419 tggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaa 518  Q
    |||||||||| |||| |||| | | | |||||||||||||||||||||||||| |||||||  ||||| ||||||||| | ||||||  ||| |  ||||    
T  54453611 tggcatttagaatgggaatgaatagttgtttcccaccatgggaaagtaaatttaatccatttaattaaataaagaacactttcttatcatactccttcaa 54453512  T
Q  519 cactagatta 528  Q
    ||||||||||    
T  54453511 cactagatta 54453502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 13857217 - 13857172
Alignment:
Q  490 aagaacattgtcttatggtacactctcaacactagattatcttttt 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  13857217 aagaacactgtcttatagtacactctcaacactagattatcttttt 13857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 490 - 535
Target Start/End: Complemental strand, 13868746 - 13868701
Alignment:
Q  490 aagaacattgtcttatggtacactctcaacactagattatcttttt 535  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||    
T  13868746 aagaacactgtcttatagtacactctcaacactagattatcttttt 13868701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 446 - 486
Target Start/End: Complemental strand, 33409456 - 33409416
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaa 486  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  33409456 gtttcccaccataggaaagtaaattttatccattagattaa 33409416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 232068 - 232031
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||||||||||||||||||||||||||| |||||||||    
T  232068 gtttcccaccatgggaaagtaaattttaaccattagat 232031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 486
Target Start/End: Complemental strand, 17512247 - 17512185
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaa 486  Q
    |||||||||  |||||| | | |||||||| |||||||||||||||||||  |||||||||||    
T  17512247 tttagcatgagaatggatagttgtttcccatcatgggaaagtaaattttagtcattagattaa 17512185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 23383339 - 23383389
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||| ||||||||||||| ||| || | |||||||    
T  23383339 gtttcccaccatgggaaagttaattttatccattcgatcaaatgaagaaca 23383389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 23425255 - 23425185
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaag 487  Q
    |||||||||||| |||| |||||| | | ||||||||||||||||||||   ||| | |||||||||||||    
T  23425255 ggtggcatttagtatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaag 23425185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 494
Target Start/End: Complemental strand, 33370916 - 33370846
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaa 494  Q
    |||||||||| || ||| | | |||||||||||||||||||| ||| ||| ||||||||| ||||| ||||    
T  33370916 tttagcatgggaaaggatacttgtttcccaccatgggaaagttaatgttagccattagatcaagtagagaa 33370846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 39429225 - 39429295
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaag 487  Q
    ||||||||||||||||| |||||| | | |||||| |||||||||||||   ||| | |||||||||||||    
T  39429225 ggtggcatttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagattaag 39429295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 497
Target Start/End: Complemental strand, 50710435 - 50710385
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaacat 497  Q
    ||||||||||||||||||||||| ||  ||||||||| ||||| |||||||    
T  50710435 tttcccaccatgggaaagtaaatattgaccattagataaagtagagaacat 50710385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 4746725 - 4746786
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    |||||| ||| || ||||| ||||||||||||||||| |||| ||| ||||||||| |||||    
T  4746725 agcatatgaaatctcttggttgtgtccttgagcatttgtaatcagtagtgattataatgaaa 4746786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 490
Target Start/End: Original strand, 30808621 - 30808694
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaa 490  Q
    |||||||||||  |||| || ||| | | |||||||||||||||||||| || |||  ||||||||||||||||    
T  30808621 ggtggcatttaaaatgggaaaggagagttgtttcccaccatgggaaagttaaatttgaccattagattaagtaa 30808694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1551 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold1551
Description:

Target: scaffold1551; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 1003 - 1068
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaactct 74  Q
    |||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  1003 agcataggaaatcacttggctgtgtccttgagcatttgtaattagttgtgattatagtgaaactct 1068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 447 - 529
Target Start/End: Complemental strand, 25075053 - 25074971
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacactagattat 529  Q
    ||||||||||||||||||| || |||| |||||||||||| | |||||||   || ||||||||||| |||||||||||||||    
T  25075053 tttcccaccatgggaaagttaactttagccattagattaattgaagaacacaatcatatggtacactttcaacactagattat 25074971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 447 - 529
Target Start/End: Complemental strand, 25133022 - 25132940
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacactagattat 529  Q
    ||||||||||||||||||| || |||| |||||||||||| | |||||||   || ||||||||||| |||||||||||||||    
T  25133022 tttcccaccatgggaaagttaactttagccattagattaattgaagaacacaatcatatggtacactttcaacactagattat 25132940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 527
Target Start/End: Complemental strand, 6381615 - 6381505
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||  ||||| || ||| || | ||| ||||||| ||||||| ||||||| ||| ||||||||| |||||||||||||||||  || ||||||    
T  6381615 ggtggcatttcacatgggaaaggataaaacttttccaccataggaaagtcaattttaaccactagattaagcaaagaacattgtcttatcatagactctc 6381516  T
Q  517 aacactagatt 527  Q
    || | ||||||    
T  6381515 aatattagatt 6381505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 529
Target Start/End: Original strand, 25074283 - 25074395
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||  |||||||||||  |||  ||| ||||||||||||||| || |||| |||||||||||| | |||||||   || ||||| |||||  |    
T  25074283 ggtggcatttcacatggaaatggttaatctttttccaccatgggaaagttaaatttaaccattagattaattgaagaacacaatcatatggcacacttcc 25074382  T
Q  517 aacactagattat 529  Q
    |||||||||||||    
T  25074383 aacactagattat 25074395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 417 - 529
Target Start/End: Original strand, 25132252 - 25132364
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctc 516  Q
    ||||||||||  |||||||||||  |||  ||| ||||||||||||||| || |||| |||||||||||| | |||||||   || ||||| |||||  |    
T  25132252 ggtggcatttcacatggaaatggttaatctttttccaccatgggaaagttaaatttaaccattagattaattgaagaacacaatcatatggcacacttcc 25132351  T
Q  517 aacactagattat 529  Q
    |||||||||||||    
T  25132352 aacactagattat 25132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 6804852 - 6804802
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  6804852 gtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaaca 6804802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 483
Target Start/End: Original strand, 18152670 - 18152736
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||||||||||||| || |||||| | | ||||||||| ||| |||||||||||||| |||||||||    
T  18152670 ggtggcatttagcacgggaatggatagttgtttcccactatgagaaagtaaattttacccattagat 18152736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 465
Target Start/End: Complemental strand, 1970562 - 1970514
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagt 465  Q
    ||||||||||||||||| |||||| | | ||||||||||||||||||||    
T  1970562 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagt 1970514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 497
Target Start/End: Complemental strand, 17767610 - 17767559
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacat 497  Q
    ||||||||||||||||||||| ||||   |||||||||||| ||||||||||    
T  17767610 gtttcccaccatgggaaagtagatttagaccattagattaactaaagaacat 17767559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 412 - 483
Target Start/End: Original strand, 32943512 - 32943583
Alignment:
Q  412 tttggggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||| ||||| ||||||||||| || ||| | | |||||||||||||||||||| ||| ||| |||||||||    
T  32943512 tttgaggtgggatttagcatgggaaaggatatttgtttcccaccatgggaaagttaatgttagccattagat 32943583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 26712407 - 26712357
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||  ||||||| |||| |||| ||||||||||||    
T  26712407 gtttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaaca 26712357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 26982145 - 26982095
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||  ||||||| |||| |||| ||||||||||||    
T  26982145 gtttcccaccatgggaaagctaattttaaccatcagatcaagtaaagaaca 26982095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 446 - 495
Target Start/End: Complemental strand, 32944503 - 32944454
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaac 495  Q
    |||||||||||||| ||||| ||| ||| ||||||||||||||| |||||    
T  32944503 gtttcccaccatggaaaagttaatgttagccattagattaagtagagaac 32944454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 16226975 - 16226928
Alignment:
Q  23 cttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  16226975 cttggatgtgtccttgagcatttgtaatcagttgtgattatagtgaaa 16226928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 417 - 487
Target Start/End: Original strand, 42345394 - 42345464
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaag 487  Q
    ||||||||||||||||| |||||| | | ||||||||||||||||||||   ||| | |||||||||||||    
T  42345394 ggtggcatttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaag 42345464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 483
Target Start/End: Complemental strand, 40451005 - 40450968
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||||||||||||||||||||||||||| |||||||||    
T  40451005 gtttcccaccatgggaaagtaaattttaaccattagat 40450968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 487
Target Start/End: Original strand, 7054089 - 7054160
Alignment:
Q  416 gggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaag 487  Q
    |||||||||||||||||| |||||| | | |||||||||||||| |||||   ||| | |||||||||||||    
T  7054089 gggtggcatttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaag 7054160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 36936436 - 36936389
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaa 494  Q
    ||||||| ||||||||||||||||||| |||||||||| | |||||||    
T  36936436 tttcccatcatgggaaagtaaattttaaccattagattcaataaagaa 36936389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 447 - 494
Target Start/End: Complemental strand, 36936715 - 36936668
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaa 494  Q
    ||||||| ||||||||||||||||||| |||||||||| | |||||||    
T  36936715 tttcccatcatgggaaagtaaattttaaccattagattcaataaagaa 36936668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 424 - 483
Target Start/End: Original strand, 37562302 - 37562361
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||||||||| || ||| ||| |||||||||||| ||||||| ||||||| |||||||||    
T  37562302 tttagcatgggaaaggagaattgtttcccaccataggaaagtcaattttaaccattagat 37562361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 529
Target Start/End: Original strand, 38572252 - 38572334
Alignment:
Q  447 tttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacactagattat 529  Q
    ||||||||||||||||||| || || | |||||||||||| | |||||||   ||||||  |||||| ||| |||||||||||    
T  38572252 tttcccaccatgggaaagttaacttaaaccattagattaattgaagaacacaatcttatcatacactgtcagcactagattat 38572334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 16198 - 16137
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| | | |||||||||||||||    
T  16198 agcataggaagtctcttggttgtgtccttgagcatttgtaatcattagtgattatagtgaaa 16137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 16934078 - 16934139
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| | | |||||||||||||||    
T  16934078 agcataggaagtctcttggttgtgtccttgagcatttgtaatcattagtgattatagtgaaa 16934139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 446 - 496
Target Start/End: Complemental strand, 41768762 - 41768712
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  41768762 gtttcccaccatgggaaagtcaattttgaccattagattaggtaaagaaca 41768712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 446 - 483
Target Start/End: Original strand, 36390986 - 36391023
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagat 483  Q
    |||||||||||||||||||||||||||| |||||||||    
T  36390986 gtttcccaccatgggaaagtaaattttaaccattagat 36391023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 446 - 549
Target Start/End: Complemental strand, 4386227 - 4386126
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacactagattatcttttttccctatctt 545  Q
    |||||||||||||||||||  ||||| | |  ||||||||| || ||| ||| |||||||  ||||||||||||||||||  || |||| || |||||||    
T  4386227 gtttcccaccatgggaaagctaatttaaacggttagattaaatatagagcatagtcttatcatacactctcaacactaga--attttttgtcactatctt 4386130  T
Q  546 ccac 549  Q
    ||||    
T  4386129 ccac 4386126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 424 - 488
Target Start/End: Original strand, 34617660 - 34617724
Alignment:
Q  424 tttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagt 488  Q
    |||||||||| || ||| ||| |||||||||||||||||||| | ||||  ||||||||||||||    
T  34617660 tttagcatgggaaaggataattgtttcccaccatgggaaagttatttttgaccattagattaagt 34617724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 446 - 493
Target Start/End: Complemental strand, 7868160 - 7868113
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaaga 493  Q
    |||||||||||||||||||||||||||| ||| ||||| || ||||||    
T  7868160 gtttcccaccatgggaaagtaaattttaaccactagatcaaataaaga 7868113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 456 - 523
Target Start/End: Original strand, 9370997 - 9371064
Alignment:
Q  456 atgggaaagtaaattttatccattagattaagtaaagaacattgtcttatggtacactctcaacacta 523  Q
    |||||||||||||||| | |||||||||||| | ||||||||  | ||||  ||||||||||||||||    
T  9370997 atgggaaagtaaatttcagccattagattaaatgaagaacatacttttatcatacactctcaacacta 9371064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 13073294 - 13073247
Alignment:
Q  23 cttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||| |||||| |||||||||| |||||||| |||||||||||||||    
T  13073294 cttggttgtgtcattgagcatttgtaattagtagtgattatagtgaaa 13073247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 19593982 - 19593923
Alignment:
Q  11 cataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||| ||||| ||||| ||| ||||||||||||  |||| |||||||||||||||||||    
T  19593982 catagaaagtctcttggttgtttccttgagcattggtaatcagttgtgattatagtgaaa 19593923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 23959036 - 23958982
Alignment:
Q  16 gaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    |||||| ||||  ||||||||| ||||||| |||||||||||||||||| |||||    
T  23959036 gaagtctcttgtttgtgtccttaagcatttgtaattagttgtgattataatgaaa 23958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 496
Target Start/End: Original strand, 37545705 - 37545755
Alignment:
Q  446 gtttcccaccatgggaaagtaaattttatccattagattaagtaaagaaca 496  Q
    |||||||||||||||||||| || |||  |||||||||||||||| |||||    
T  37545705 gtttcccaccatgggaaagttaaatttgaccattagattaagtaatgaaca 37545755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 486
Target Start/End: Original strand, 20991287 - 20991356
Alignment:
Q  417 ggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaa 486  Q
    ||||||||||||||||| |||||| | | |||| |||||||||||||||   ||| | ||||||||||||    
T  20991287 ggtggcatttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaa 20991356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 42255911 - 42255854
Alignment:
Q  9 agcataggaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagt 66  Q
    |||||| |||||| ||||| ||||||||||| ||||| |||| |||||| ||||||||    
T  42255911 agcatatgaagtctcttggttgtgtccttgaacatttgtaatcagttgtaattatagt 42255854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 29290117 - 29290200
Alignment:
Q  411 gtttggggtggcatttagcatggaaatggacaatagtttcccaccatgggaaagtaaattttatccattagattaagtaaagaa 494  Q
    |||| ||||||  ||||||||||||||||| | | |||||||||||||||||||| ||| ||| ||||  |||||| |||||||    
T  29290117 gtttagggtggggtttagcatggaaatggagagttgtttcccaccatgggaaagttaatgttaaccatgggattaaataaagaa 29290200  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 29031591 - 29031551
Alignment:
Q  30 gtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    ||||| |||||||||| ||||||||||||||||||||||||    
T  29031591 gtgtctttgagcatttgtaattagttgtgattatagtgaaa 29031551  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 19741394 - 19741340
Alignment:
Q  16 gaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    |||||| ||||| ||||||||||||||||| |||| ||| ||||||||| |||||    
T  19741394 gaagtctcttggttgtgtccttgagcatttgtaataagtcgtgattatattgaaa 19741340  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 21737175 - 21737121
Alignment:
Q  16 gaagtcgcttggatgtgtccttgagcatttataattagttgtgattatagtgaaa 70  Q
    |||||| ||||||| | ||||||||||||| |||  |||||||||||||||||||    
T  21737175 gaagtctcttggatatctccttgagcatttgtaaacagttgtgattatagtgaaa 21737121  T

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