View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_high_10 (Length: 423)
Name: NF18769_high_10
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 420
Target Start/End: Original strand, 29544205 - 29544610
Alignment:
| Q |
17 |
tataccaatagcattgagaaagtttgtatgatgatcctgaaatattgttaagattactcacttatataacctgcaacaatctaatgtctcttatgtgaag |
116 |
Q |
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| T |
29544205 |
tataccaatagcattgagaaagtttgtatgatgatcctgaaatattgttaagattactcacttatatagcctgcaacaatctaatgtctcttatgtgaag |
29544304 |
T |
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| Q |
117 |
atatatggtatacccatttgttatggttacttcaagctttgta--ttgttctttgatgtgtatttagtgcaaacacttgacgcagaacctgttctaagct |
214 |
Q |
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| T |
29544305 |
atat--ggtatacccatttgttatggttacttcaagctttgtactttgttctttgatgtgtatttagtgcaaacacttgacgcagaacctgttctaagct |
29544402 |
T |
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| Q |
215 |
tttggctt-----cggacttaatgttcaactgggttctttgtaccacaacaagtacaaccaagttatcgacgtgcatcaattgggttctttgtacttagt |
309 |
Q |
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| T |
29544403 |
tttggctttacctcggacttaatgttcaactgggttctgtgtaccacaa---gtacaaccaagttatcgacgtgcatcaattgggttctttgtacttagt |
29544499 |
T |
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| Q |
310 |
aactctctttccttttactgtgtgtatcaacgtgcattcttgcaatcatatgcacattgatatatgtttatgcatttattttatagcaggatgaactaga |
409 |
Q |
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| T |
29544500 |
aactctctttccttttactgtgtgtatcaacgtgcattcttgcaatcatatgcacattgatatatgtttatgcatttattttatagcaggatgaactaga |
29544599 |
T |
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| Q |
410 |
aattatttctt |
420 |
Q |
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| T |
29544600 |
aattatttctt |
29544610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 29535122 - 29535195
Alignment:
| Q |
311 |
actctctttccttttactgtgtgtatcaacgtgcattcttgcaatcatatgcacattgatatatgtttatgcat |
384 |
Q |
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| T |
29535122 |
actctctttccttctactgtgtttatcaacgtgcattcttgtaatcatatgaaccttgatatatgtttttgcat |
29535195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 29535035 - 29535080
Alignment:
| Q |
214 |
ttttggcttcggacttaatgttcaactgggttctttgtaccacaac |
259 |
Q |
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| T |
29535035 |
ttttggcttcagacttaatgttcaactgggttctttttaccacaac |
29535080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 419
Target Start/End: Original strand, 29535224 - 29535261
Alignment:
| Q |
382 |
catttattttatagcaggatgaactagaaattatttct |
419 |
Q |
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| T |
29535224 |
catttattttattgcaggatgaactagaaattacttct |
29535261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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