View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_high_17 (Length: 319)

Name: NF18769_high_17
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_high_17
NF18769_high_17
[»] chr6 (3 HSPs)
chr6 (23-308)||(35029504-35029789)
chr6 (43-234)||(34970281-34970472)
chr6 (31-251)||(34952406-34952629)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 35029789 - 35029504
Alignment:
Q  23 tgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35029789 tgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatt 35029690  T
Q  123 tgttggaaaatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaa 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  35029689 tgttggaaaatggagtgatgagggtaagatcattcttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaa 35029590  T
Q  223 cttctctgattcttgaatatcaattctacccaacatcagctccgatttcacacaaatgtgtgatctatgatcgatttcatctcact 308  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35029589 cttctctgattcttgaatatcaattctacccaacatcaactctgatttcacacaaatgtgtgatctatgatcgatttcatatcact 35029504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 34970472 - 34970281
Alignment:
Q  43 aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg 142  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||||||| ||||||||||||||||| ||||||||||| |    
T  34970472 aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg 34970373  T
Q  143 agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc 234  Q
    |||||||||||||||| |||||| |||||||| ||||||| || || | |||||||| ||||| ||| || |||||||||||||||||||||    
T  34970372 agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc 34970281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 34952629 - 34952406
Alignment:
Q  31 agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa 130  Q
    |||||||||  ||||||||||||| | |  |||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  34952629 agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa 34952530  T
Q  131 aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctg 230  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||| ||||||| || || | |||||| | ||||| ||| ||  ||||||| ||||  ||    
T  34952529 aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattg 34952430  T
Q  231 attcttg---aatatcaattctac 251  Q
    |||| ||   ||||||||||||||    
T  34952429 attcatgatcaatatcaattctac 34952406  T

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