View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_high_19 (Length: 309)
Name: NF18769_high_19
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 8315129 - 8314833
Alignment:
| Q |
1 |
cttgcttcatgttttccggtgagatatgatgtatcaactatcaagtattcactttttgacctaagcacaatctctttatactctaaattaattctagctt |
100 |
Q |
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| T |
8315129 |
cttgcctcatgttttccggtgagatatgacatatcagctatcaagtattcaccttttgacctaagcacaatctctttatactctaagttaattctagcta |
8315030 |
T |
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| Q |
101 |
ttgaagtagctagaaaaggttttcctagggtcactggacactcaaccatgtccatcactactatgtccgccaagaatttaaaattctccacctcgactta |
200 |
Q |
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| T |
8315029 |
ttgaagtagctagaaaaggttttcctagggtcactggacactcagccatgtccatcactactatgtccgccaagaatttaaaattctccacctcgactta |
8314930 |
T |
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| Q |
201 |
cacattaattaaatattatttcttctggttcatgtagtgtcccattagctactcccacaagtttttcagctggtatgatcctcagtcctttgatatt |
297 |
Q |
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| T |
8314929 |
cacataaattaaatattatttcttctggttcatgtagtgtcccatcagctactcccacaagtttttcagctggtatgatcatcagtcctttgatatt |
8314833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 179
Target Start/End: Original strand, 6040782 - 6040812
Alignment:
| Q |
149 |
tgtccatcactactatgtccgccaagaattt |
179 |
Q |
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| T |
6040782 |
tgtccatcactactatgtccgccaagaattt |
6040812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 39 - 196
Target Start/End: Original strand, 16857462 - 16857618
Alignment:
| Q |
39 |
tatcaagtattcactttttgacctaagcacaatctctttatactctaaattaattctagcttttgaagtagctagaaaaggttttcctagggtcactgga |
138 |
Q |
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| T |
16857462 |
tatcaagtattcaccttt-gacctaagcccaatctctttatactccaagttgattcaagattttgaagtagctagaaaatgtgtgcctaaggtcactaga |
16857560 |
T |
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| Q |
139 |
cactcaaccatgtccatcactactatgtccgccaagaatttaaaattctccacctcga |
196 |
Q |
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| T |
16857561 |
cactcagccatgtccatcactactatgtcccccaagaatttaaaagtctctacctcga |
16857618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 23339311 - 23339144
Alignment:
| Q |
39 |
tatcaagtattcactttttgacctaagcacaatctctttatactctaaattaattctagcttttgaagtagctagaaaaggttttcctagggtcactgga |
138 |
Q |
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||||||||||| || ||||||||| |||| ||| | ||||| ||| || || || ||||||||||||||||||||||||| | |||| |||||||||| |
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| T |
23339311 |
tatcaagtatttaccttttgacctcagcataatttatttatgctccaagttgatctgagcttttgaagtagctagaaaaggtctgcctaaggtcactgga |
23339212 |
T |
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| Q |
139 |
cactcaaccatgtccatcactactatgtccgccaagaatttaaaattctccacctcgacttacacatt |
206 |
Q |
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| T |
23339211 |
tattcatccgtgtccatcaatactatgtccgtcaagagtttgaaattttccacctcgacttgcacatt |
23339144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 14126205 - 14126049
Alignment:
| Q |
43 |
aagtattcactttttgacctaagcacaatctctttatactctaaattaattctagcttttgaagtagctagaaaaggttttcctagggtcactggacact |
142 |
Q |
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||||||| || ||||||| | ||||||||||| || | ||| || || |||| ||||||| ||||||| ||| || | |||| ||||| |||||||| |
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| T |
14126205 |
aagtatttaccttttgacatgagcacaatctcgttgttctccaagtttattcgagcttttccgatagctaggaaatgtctgcctaaggtcattggacact |
14126106 |
T |
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| Q |
143 |
caaccatgtccatcactactatgtccgccaagaatttaaaattctccacctcgactt |
199 |
Q |
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| T |
14126105 |
cagccatgtccattaccactatgtccaccaagaatttgaaattctccacctcgactt |
14126049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 14126009 - 14125957
Alignment:
| Q |
242 |
ccattagctactcccacaagtttttcagctggtatgatcctcagtcctttgat |
294 |
Q |
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|||| ||||||||||||||| ||||||| |||| | ||||| ||||||||||| |
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| T |
14126009 |
ccatcagctactcccacaagcttttcagatggtgtcatccttagtcctttgat |
14125957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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