View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_high_20 (Length: 292)

Name: NF18769_high_20
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_high_20
NF18769_high_20
[»] chr7 (7 HSPs)
chr7 (20-288)||(39257829-39258097)
chr7 (37-186)||(39224855-39225004)
chr7 (38-186)||(39196147-39196295)
chr7 (42-187)||(39240354-39240499)
chr7 (38-186)||(39217757-39217905)
chr7 (41-188)||(39179066-39179213)
chr7 (38-156)||(39261777-39261895)


Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 288
Target Start/End: Complemental strand, 39258097 - 39257829
Alignment:
Q  20 tatttgacaaatcagcatcatgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39258097 tatttgacaaatcagcatcatgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacg 39257998  T
Q  120 tagctgatgcatatcttggtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatgaatgtgagataaggattttgaaatacatgcatc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39257997 tagctgatgcatatcttggtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatgaatgtgagataaggattttgaaatacatgcatc 39257898  T
Q  220 actaactttattctatgttatctcgatgcattatttatgcttgacatgatttttgttttcttctcactc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39257897 actaactttattctatgttatctcgatgcattatttatgcttgacatgatttttgttttcttttcactc 39257829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 39225004 - 39224855
Alignment:
Q  37 tcatgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatctt 136  Q
    |||| |||||||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||| | || ||||| ||| ||    
T  39225004 tcatcagggtactgtggaagcttcaaacaacgttagcaactgggcaggttcggtgtggatgatgccacttgtaggagcttacattgccgatgcttatttt 39224905  T
Q  137 ggtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatg 186  Q
    || || || |||||||||||||||||||| ||||||||||||||||||||    
T  39224904 ggccgctattggacctttgtagttgcatcatgcatttatctcttggtatg 39224855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 39196295 - 39196147
Alignment:
Q  38 catgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttg 137  Q
    |||||||| |||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| ||||| ||| |||    
T  39196295 catgagggaactgtggaatctgcaaacaacgttagcaactgggcgggttcggtgtggatgatgccacttgtaggagcttacatagccgatgcttattttg 39196196  T
Q  138 gtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatg 186  Q
    | || || |||||||| ||| ||||||| ||||||||||||||||||||    
T  39196195 gccgctattggaccttcgtaattgcatcatgcatttatctcttggtatg 39196147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 39240499 - 39240354
Alignment:
Q  42 agggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtcg 141  Q
    |||||||||||||||||||||||||  ||||||||||||  || ||||||||| |||||||||||| ||||||||| ||||||||||| |||||||| ||    
T  39240499 agggtactgtggaatcttcaaacaatattagcaattggggaggatcagtttggttgatgccacttgcaggagcttatgtagctgatgcttatcttggccg 39240400  T
Q  142 atactggacctttgtagttgcatcgtgcatttatctcttggtatga 187  Q
    ||| |||||||||||| ||||||| |||||||| ||| ||||||||    
T  39240399 atattggacctttgtaattgcatcatgcatttacctcatggtatga 39240354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 38 - 186
Target Start/End: Complemental strand, 39217905 - 39217757
Alignment:
Q  38 catgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttg 137  Q
    |||||||| |||||||||||| |||||||||||||||| |||  ||| |  || ||||||||||||||||||||||||||| |||| ||||| ||| | |    
T  39217905 catgagggaactgtggaatctgcaaacaacgttagcaactggaaggggttggtgtggatgatgccacttgtaggagcttacatagccgatgcttatttcg 39217806  T
Q  138 gtcgatactggacctttgtagttgcatcgtgcatttatctcttggtatg 186  Q
    |||| || |||||||||||| ||||||| ||||||||||||||||||||    
T  39217805 gtcgctattggacctttgtaattgcatcatgcatttatctcttggtatg 39217757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 188
Target Start/End: Complemental strand, 39179213 - 39179066
Alignment:
Q  41 gagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttggtc 140  Q
    |||||||||||||| || ||||||||| | ||||| | || |||| |||| |||||||||||||||| |||||| ||| |||||||||| ||||||||      
T  39179213 gagggtactgtggagtcatcaaacaacataagcaacttggggggtgcagtgtggatgatgccacttgcaggagcctacatagctgatgcctatcttggaa 39179114  T
Q  141 gatactggacctttgtagttgcatcgtgcatttatctcttggtatgaa 188  Q
    |||| | |||||||||  ||||||| ||||||||| || |||||||||    
T  39179113 gatatttgacctttgtgattgcatcatgcatttatttcatggtatgaa 39179066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 39261895 - 39261777
Alignment:
Q  38 catgagggtactgtggaatcttcaaacaacgttagcaattgggcgggttcagtttggatgatgccacttgtaggagcttacgtagctgatgcatatcttg 137  Q
    ||||||||||||||  ||||||||||| | || | ||||||||  ||| |||||||||| ||||||  | | ||||||||| |||||||||| ||||| |    
T  39261895 catgagggtactgtcaaatcttcaaaccatgtcaccaattgggtcggtacagtttggatcatgccagctattggagcttacatagctgatgcttatctcg 39261796  T
Q  138 gtcgatactggacctttgt 156  Q
    ||||||| |||||||||||    
T  39261795 gtcgatattggacctttgt 39261777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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