View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_high_9 (Length: 449)

Name: NF18769_high_9
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_high_9
NF18769_high_9
[»] chr4 (5 HSPs)
chr4 (17-338)||(40011774-40012095)
chr4 (382-438)||(40012141-40012197)
chr4 (248-302)||(31053044-31053098)
chr4 (184-229)||(27763470-27763515)
chr4 (250-302)||(10355239-10355291)
[»] scaffold0245 (1 HSPs)
scaffold0245 (185-298)||(5659-5773)
[»] scaffold0229 (1 HSPs)
scaffold0229 (185-298)||(5989-6103)
[»] chr1 (5 HSPs)
chr1 (185-298)||(1279981-1280095)
chr1 (232-307)||(48252402-48252478)
chr1 (251-307)||(35120168-35120224)
chr1 (248-307)||(28016578-28016637)
chr1 (174-227)||(35120172-35120225)
[»] chr3 (3 HSPs)
chr3 (210-309)||(2973050-2973150)
chr3 (248-301)||(35970437-35970490)
chr3 (248-313)||(50888527-50888592)
[»] chr2 (4 HSPs)
chr2 (173-307)||(1465734-1465869)
chr2 (175-215)||(13292789-13292829)
chr2 (250-300)||(13056660-13056710)
chr2 (248-300)||(1465743-1465795)
[»] chr5 (2 HSPs)
chr5 (246-307)||(17358519-17358580)
chr5 (248-331)||(11649039-11649122)
[»] chr7 (3 HSPs)
chr7 (248-300)||(45429318-45429370)
chr7 (250-301)||(7465266-7465317)
chr7 (248-301)||(18358792-18358845)
[»] chr8 (1 HSPs)
chr8 (252-302)||(25487649-25487699)
[»] chr6 (2 HSPs)
chr6 (174-226)||(3245827-3245879)
chr6 (175-227)||(8514159-8514211)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 40011774 - 40012095
Alignment:
Q  17 attaacgaggtttggttcgatgaaaataacaatgggaaaaggaaaaagacgagtaagcgaagtgaggttcaggttgtgaggtttcttgttgataggtttg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011774 attaacgaggtttggttcgatgaaaataacaatgggaaaaggaaaaagacgagtaagcgaagtgaggttcaggttgtgaggtttcttgttgataggtttg 40011873  T
Q  117 cgttctgtttttcatttgctgtcaattcttttgggagttagttagtatgcattgctggtgtaaaattattttacacattcatccaatgacgtattgtcat 216  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40011874 tgttctgtttttcatttgctgtcaattcttttgggagttagttagaatgcattgttggtgtaaaattattttacacattcatccaatgacgtattgtcat 40011973  T
Q  217 atcatttaatatcgttgaaaaaacatgagtatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtt 316  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40011974 atcatttaatgtggttgaaaaaacatgagtatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtt 40012073  T
Q  317 tacgaaaattaaacttgattga 338  Q
    ||||||||||||||||||||||    
T  40012074 tacgaaaattaaacttgattga 40012095  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 40012141 - 40012197
Alignment:
Q  382 gtaggttgtgtgataaggaaattggggctaaggattgggaattttcgaggttgatga 438  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  40012141 gtaggttgtgtgataaggaaattagggctaaggattggaaattttcgaggttgatga 40012197  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 31053044 - 31053098
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 302  Q
    ||||||||||||||||||  |  ||||||||||||  ||||||||||||||||||    
T  31053044 tcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 27763470 - 27763515
Alignment:
Q  184 attttacacattcatccaatgacgtattgtcatatcatttaatatc 229  Q
    ||||||||||| ||| ||| |||||||||||| |||||||||||||    
T  27763470 attttacacatgcattcaacgacgtattgtcacatcatttaatatc 27763515  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 302
Target Start/End: Complemental strand, 10355291 - 10355239
Alignment:
Q  250 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 302  Q
    |||||||||||||||||||  || |||| ||||| ||||| ||||||||||||    
T  10355291 atattcattaattgacatgacaaaacatgattgaatgcatatgtaaaataatt 10355239  T

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Target: scaffold0245 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 5773 - 5659
Alignment:
Q  185 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 282  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  5773 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 5675  T
Q  283 agtgcatgtgtaaaat 298  Q
     |||||||||||||||    
T  5674 ggtgcatgtgtaaaat 5659  T

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Target: scaffold0229 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 6103 - 5989
Alignment:
Q  185 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 282  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  6103 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 6005  T
Q  283 agtgcatgtgtaaaat 298  Q
     |||||||||||||||    
T  6004 ggtgcatgtgtaaaat 5989  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 185 - 298
Target Start/End: Complemental strand, 1280095 - 1279981
Alignment:
Q  185 ttttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatat-tcattaattgacatggaaacacatcattg 282  Q
    |||||||||| |||||||||| ||||||||| ||||||||||  |||| |||| |||||| |  |||||  |||||||||||| ||| ||||||||||||    
T  1280095 ttttacacatgcatccaatgatgtattgtcacatcatttaatg-cgttaaaaacacatgacttgtcatacctcattaattgacgtggcaacacatcattg 1279997  T
Q  283 agtgcatgtgtaaaat 298  Q
     |||||||||||||||    
T  1279996 ggtgcatgtgtaaaat 1279981  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 48252478 - 48252402
Alignment:
Q  232 tgaaaaaacatgagt-atcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 307  Q
    |||||| |||||||| |||||||| |||||||||  ||||||||||||||||| || ||||||||||| ||| ||||    
T  48252478 tgaaaatacatgagttatcatatttattaattgatgtggaaacacatcattgaatgtatgtgtaaaattattgtaca 48252402  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 35120168 - 35120224
Alignment:
Q  251 tattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 307  Q
    |||| |||||||||||||| || |||||||||  |||||||||||||||| ||||||    
T  35120168 tatttattaattgacatggcaatacatcattggatgcatgtgtaaaataactttaca 35120224  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 307
Target Start/End: Complemental strand, 28016637 - 28016578
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 307  Q
    |||||||| |||||||| |||  ||||||||||||| || ||||||||||||||| ||||    
T  28016637 tcatattcgttaattgaaatgacaacacatcattgaatgtatgtgtaaaataattgtaca 28016578  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 35120225 - 35120172
Alignment:
Q  174 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 227  Q
    ||||||| ||||||||||||| |||||||||| |||||| ||| ||| ||||||    
T  35120225 gtgtaaagttattttacacatgcatccaatgatgtattgccatgtcaattaata 35120172  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 210 - 309
Target Start/End: Complemental strand, 2973150 - 2973050
Alignment:
Q  210 ttgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaa 308  Q
    |||||| |||||||||||| |||||||| |||||| |  ||||||||||| |||||| || ||||| || ||| | ||||  ||||||||||||||||||    
T  2973150 ttgtcacatcatttaatatggttgaaaatacatgatttgtcatattcattgattgacgtgaaaacatattattaaatgcaaatgtaaaataattttacaa 2973051  T
Q  309 t 309  Q
    |    
T  2973050 t 2973050  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 35970490 - 35970437
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 301  Q
    |||||||||||||||||| ||  ||||||| ||||| |||||||||||||||||    
T  35970490 tcatattcattaattgacgtgacaacacatgattgaatgcatgtgtaaaataat 35970437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 50888592 - 50888527
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgtta 313  Q
    |||||||||||||||||| | | || ||||||||   | ||||||||||||||||||||| |||||    
T  50888592 tcatattcattaattgacgttgtaagacatcatttgatacatgtgtaaaataattttacattgtta 50888527  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 307
Target Start/End: Original strand, 1465734 - 1465869
Alignment:
Q  173 ggtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaatatcgttgaaaaaacatgagta-tcatattcattaattgacatggaa 271  Q
    |||||| | ||||||||||||| |||||||||| || ||||||  ||| ||||||    |||||| ||| ||||  ||||||| || || |||  |||||    
T  1465734 ggtgtacagttattttacacatgcatccaatgatgtgttgtcacgtcaattaataaatatgaaaacacacgagttgtcatattgatcaaatgatgtggaa 1465833  T
Q  272 acacatcattgagtgcatgtgtaaaataattttaca 307  Q
    |||||||||||  |||||||||||||||||| ||||    
T  1465834 acacatcattggatgcatgtgtaaaataattgtaca 1465869  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 13292789 - 13292829
Alignment:
Q  175 tgtaaaattattttacacattcatccaatgacgtattgtca 215  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  13292789 tgtaaaattattttacacattcattcaatgatgtattgtca 13292829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 13056660 - 13056710
Alignment:
Q  250 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 300  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||||||||||    
T  13056660 atattcattcattgatgtggcaacacatcattgaatgcatgtgtaaaataa 13056710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 1465795 - 1465743
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 300  Q
    ||||||| |||||||||| ||  ||||||||||||  ||||||||||||||||    
T  1465795 tcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataa 1465743  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 17358580 - 17358519
Alignment:
Q  246 tatcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttaca 307  Q
    |||||| |||||||||||||||| | ||||||||| |  |||||||||||||||| ||||||    
T  17358580 tatcatcttcattaattgacatgaagacacatcatagtatgcatgtgtaaaataactttaca 17358519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 331
Target Start/End: Complemental strand, 11649122 - 11649039
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataattttacaatgttagtttacgaaaattaaact 331  Q
    ||||||||||||||||| |||  ||||||||||||  ||||||| |||||||| ||||||  ||| || ||  |||||||||||    
T  11649122 tcatattcattaattgagatgtcaacacatcattgtatgcatgtataaaataactttacatagttggtgtataaaaattaaact 11649039  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 300
Target Start/End: Original strand, 45429318 - 45429370
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataa 300  Q
    |||||||||||||||||||||| |||| ||||||   ||||||||||||||||    
T  45429318 tcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 301
Target Start/End: Complemental strand, 7465317 - 7465266
Alignment:
Q  250 atattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 301  Q
    ||||||||||||||||||  |||||||| ||||| | |||||||||||||||    
T  7465317 atattcattaattgacataaaaacacataattgaatccatgtgtaaaataat 7465266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Complemental strand, 18358845 - 18358792
Alignment:
Q  248 tcatattcattaattgacatggaaacacatcattgagtgcatgtgtaaaataat 301  Q
    |||||||||||||||||||||  |||||||||||   |||||||| ||||||||    
T  18358845 tcatattcattaattgacatgacaacacatcatttgatgcatgtgcaaaataat 18358792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 25487649 - 25487699
Alignment:
Q  252 attcattaattgacatggaaacacatcattgagtgcatgtgtaaaataatt 302  Q
    |||||||||||||| ||| ||||||||||||| |  |||||||||||||||    
T  25487649 attcattaattgacgtggcaacacatcattgaatatatgtgtaaaataatt 25487699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 3245879 - 3245827
Alignment:
Q  174 gtgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaat 226  Q
    ||||||| ||||||||| |||  || ||||||||||||||||||||| |||||    
T  3245879 gtgtaaacttattttactcatatattcaatgacgtattgtcatatcaattaat 3245827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 227
Target Start/End: Complemental strand, 8514211 - 8514159
Alignment:
Q  175 tgtaaaattattttacacattcatccaatgacgtattgtcatatcatttaata 227  Q
    |||| ||||||||||||||| ||| |||||| ||||||||| |||| ||||||    
T  8514211 tgtataattattttacacatacatgcaatgatgtattgtcacatcaattaata 8514159  T

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