View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_13 (Length: 355)
Name: NF18769_low_13
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 43436388 - 43436060
Alignment:
| Q |
1 |
tattctcgtgtttggtttcttttggtacttatataactcattttgttaaaaagttatatattggatgagatatggtcttatatataatgtgttaataagt |
100 |
Q |
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| T |
43436388 |
tattctcgtgtttggtttcttttggtagttatataactcattttgttaaaaagttctatattggatgagatatggtcttatatgtaatgtgttaataagt |
43436289 |
T |
|
| Q |
101 |
gggaggcactcatcatttataagtcggttttgtaaggatgagcaagtcttagtattgaagttgtttggagtctaatattgctcaaatttttaagttattg |
200 |
Q |
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| T |
43436288 |
gggaggaactcatcacttataagtcggttttgtgaggatgagcaagtctcagtattgaagttgtttggagtctgacattgctcaaatttctaagttattg |
43436189 |
T |
|
| Q |
201 |
gatgtataaatgtgtttggacatcctcaccctttgagctgacttttgggataatccaaaccgatttaacgtggtatcaaaaccgagttaagtattgcaat |
300 |
Q |
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| T |
43436188 |
gatgtataaatgtgtttggacatcctcaccctttgagctgacttttgggataatccaaaccgatttaacgtggtatcaaaaccgagttaagtattgcaat |
43436089 |
T |
|
| Q |
301 |
gtgggaaccggactcaggctcatgctagc |
329 |
Q |
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| T |
43436088 |
gtgggaaccggactcaggctcatgctagc |
43436060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 34262323 - 34262246
Alignment:
| Q |
149 |
ttagtattgaagttgt-ttggagtctaatattgctcaaatttttaagttattggatgtataaatgtgtttggacatcc |
225 |
Q |
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| T |
34262323 |
ttagtattaaagttgtattggagtctcacattgctctagttttcaagttgttgaatgtataaatgtgtttgaacatcc |
34262246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 2717791 - 2717723
Alignment:
| Q |
152 |
gtattgaagttgt-ttggagtctaatattgctcaaatttttaagttattggatgtataaatgtgtttgg |
219 |
Q |
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| T |
2717791 |
gtattgaagttgtattggagtcccacattgctcaagttcctgagctattggatgtataaatgtgtttgg |
2717723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 23734879 - 23734946
Alignment:
| Q |
152 |
gtattgaagttgt-ttggagtctaatattgctcaaatttttaagttattggatgtataaatgtgtttg |
218 |
Q |
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| T |
23734879 |
gtattgaagttgtattggagtctcatattgctcaaatttttggattattggatgtataaatgtgtttg |
23734946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 44019670 - 44019620
Alignment:
| Q |
201 |
gatgtataaatgtgtttggacatcctcaccctttgagctgacttttgggat |
251 |
Q |
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| T |
44019670 |
gatgtataaatgtgtttgggcaccctcatcctttgagctaacttttgggat |
44019620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 16413040 - 16412996
Alignment:
| Q |
203 |
tgtataaatgtgtttggacatcctcaccctttgagctgacttttg |
247 |
Q |
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| T |
16413040 |
tgtataaatgtgcttggatatcctcatcctttgagctggcttttg |
16412996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 333
Target Start/End: Complemental strand, 23564596 - 23564485
Alignment:
| Q |
224 |
cctcaccctttgagctgacttttgggat--aatccaaaccgatttaacgtggtatcaaaaccgagttaagtattgcaatgtgggaaccggactcaggctc |
321 |
Q |
| |
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||||| |||||||||| ||||||||||| ||||||||| ||||||| |||||||| | || ||||| ||| |||||||||| | ||||||||| | |
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| T |
23564596 |
cctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatcagagcctggttaaagattataatgtgggaatcagactcaggccc |
23564497 |
T |
|
| Q |
322 |
atgctagccgtg |
333 |
Q |
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| T |
23564496 |
acgctaggcgtg |
23564485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 50196907 - 50196986
Alignment:
| Q |
203 |
tgtataaatgtgtttggacatcctcaccctttgagctgacttttgggat--aatccaaaccgatttaacgtggtatcaaa |
280 |
Q |
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| T |
50196907 |
tgtataaatatgtttaaataccctcatcctttgagctaacttttgggatgagatccaaacctatttaacatggtatcaaa |
50196986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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