View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_14 (Length: 334)
Name: NF18769_low_14
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 31986397 - 31986238
Alignment:
| Q |
1 |
tgattgtccagaggtggtaaaacctttagttataaagtgtgttgatcatttttgtgagtacttttggttaaatttgaggggcgataatcacttaattgaa |
100 |
Q |
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| T |
31986397 |
tgattgtccaaaggttgtaaaacctttagttataaagtgtattgatcatttttgtgagtacttttggttaaatatgatgggccataatcacgtaattgta |
31986298 |
T |
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| Q |
101 |
actatgaggtcaaattcgaacaattgagaaattttaaagggcaaaagtttatttaagcat |
160 |
Q |
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| T |
31986297 |
actacgaggtcaaaatcgaacaattgagaaattttatagggcaaaagtttatttaagcat |
31986238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 31983762 - 31983627
Alignment:
| Q |
1 |
tgattgtccagaggtggtaaaacctttagttataaagtgtgttgatcatttttgtgagtacttttggttaaatttgaggggcgataatcacttaattgaa |
100 |
Q |
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| T |
31983762 |
tgattgtccaaaggtgataacacctttagttataaagtgtattgatcatttttgtgagtacttttggttaaatatgagagaccataatcacgtaattgaa |
31983663 |
T |
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| Q |
101 |
actatgaggtcaaattcgaacaattgagaaatttta |
136 |
Q |
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| T |
31983662 |
actatgaggtcaaaatcgaacaactgagagatttta |
31983627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 31986222 - 31986131
Alignment:
| Q |
147 |
gtttatttaagcatattatttatccaccataatgtttttaatttgcttcaaagtttgatgtatgtttctctgacttttcaatttaactgtatt |
239 |
Q |
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| T |
31986222 |
gtttatttaagcatattgtttacccatcataatgtttttaatttgcttcaaagtttgatttatatttctctgac-tttcaatttaattgtatt |
31986131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 131
Target Start/End: Original strand, 22471006 - 22471129
Alignment:
| Q |
12 |
aggtggtaaaacctttagttataaagtgtgttgatcatttttgtgagtactttt----ggttaaatttgaggggcgataatcacttaattgaaactatga |
107 |
Q |
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| T |
22471006 |
aggtgataaaacctctagttataaagtgtatagataaattttgtgagtactttatggagggtgaatatgaggggccataatcacataattgcaactagca |
22471105 |
T |
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| Q |
108 |
ggtcaaattcgaacaattgagaaa |
131 |
Q |
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| T |
22471106 |
agtcaaattcgaacaattgagaaa |
22471129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 31981510 - 31981451
Alignment:
| Q |
131 |
attttaaagggcaaaagtttatttaagcatattatttatccaccataatgtttttaattt |
190 |
Q |
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| T |
31981510 |
attttagatggcaaaagtttatttgagcgtattatttatccatcatagtgtttttaattt |
31981451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 31986119 - 31986085
Alignment:
| Q |
279 |
cattctattttccttcaccaagctttgtctcattg |
313 |
Q |
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| T |
31986119 |
cattctattttccttcaccaagctttgtctcattg |
31986085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Complemental strand, 31981372 - 31981343
Alignment:
| Q |
289 |
tccttcaccaagctttgtctcattggattt |
318 |
Q |
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| T |
31981372 |
tccttcaccaagctttgtctcattggattt |
31981343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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