View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_15 (Length: 333)
Name: NF18769_low_15
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_15 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 333
Target Start/End: Original strand, 35148207 - 35148544
Alignment:
| Q |
3 |
ctttcaaatatctgagcagataacagactatatcaagatgaggactacaaagtctgaacatcatctgtcttcaaagtcatcctcaaagactaactgatgt |
102 |
Q |
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| T |
35148207 |
ctttcaaatatctgagcagataacagactatatcaagatgaggactacaaagtctgaacatcatctgtcttcaaagtcttcctcaaagagtaactgatgt |
35148306 |
T |
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| Q |
103 |
ccaaagtgatgaagtactgagtaaataaaataatggaatgggtatatgtttatagcaatgaatttatataaatcaatttgaagttgtacgaaggaactaa |
202 |
Q |
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| T |
35148307 |
ccaaagtgatgaagtactgagtaaataaaataatggaatgggtatatgtttatagcaatgaatttatataaatcaatttgaagttaaacgaaggaactaa |
35148406 |
T |
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| Q |
203 |
aaacaaattgtgcaaagtcggttcatcaagaacatgtgtaacaatcctgaggcttaaaa-------tgcgtctttagttgtaaggcaacaaacaaatttg |
295 |
Q |
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| T |
35148407 |
aaacaaattgtgcaaagtcggttcatcaagaacatgtgtaacaatcctgaggcttaaaataggaactgcgtctttagttgtaaggcaacaaacaaatttg |
35148506 |
T |
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| Q |
296 |
gtgaaatgatgcaatgaaaaatatataggattggttgt |
333 |
Q |
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| T |
35148507 |
gtgaaatgatgcaatgaaaaatatataggattggttgt |
35148544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 35201096 - 35201249
Alignment:
| Q |
57 |
tgaacatcatctgtcttcaaagtcatcctcaaagactaactgatgtccaaagtgatgaagtactgagtaaataaaataatggaatgggtatatgtttata |
156 |
Q |
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| T |
35201096 |
tgaacatcatcagtcttcatagtcttcctcaaagaccatctgctgtccttgttgatgaaggactcagcaaataaaataacaaaataagtataagcttata |
35201195 |
T |
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| Q |
157 |
gcaatgaatttatataaatcaatttgaagttgtacgaaggaactaaaaacaaat |
210 |
Q |
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| T |
35201196 |
gcaatgaatttatataaatcgatttgaacttgaatataggaactgaaaacaaat |
35201249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 35221160 - 35221231
Alignment:
| Q |
134 |
aatggaatgggtatatgtttatagcaatgaatttatataaatcaatttgaagttgtacgaaggaactaaaaa |
205 |
Q |
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| T |
35221160 |
aatggaataggtataagtttatagcaatgaattaagagaaatcaatttgaacttgaatgaaggaactgaaaa |
35221231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 35200800 - 35200848
Alignment:
| Q |
4 |
tttcaaatatctgagcagataacagactatatcaagatgaggactacaa |
52 |
Q |
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| T |
35200800 |
tttcaaatatctgaacatataatagactatatcaagacgaggactacaa |
35200848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Original strand, 35209302 - 35209338
Alignment:
| Q |
297 |
tgaaatgatgcaatgaaaaatatataggattggttgt |
333 |
Q |
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| T |
35209302 |
tgaaatgatgcaatgaaaaatatataggattgtttgt |
35209338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 35271429 - 35271468
Alignment:
| Q |
4 |
tttcaaatatctgagcagataacagactatatcaagatga |
43 |
Q |
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| T |
35271429 |
tttcaaatatctgagcagataatagactgtatcaagatga |
35271468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 35253090 - 35253132
Alignment:
| Q |
4 |
tttcaaatatctgagcagataacagactatatcaagatgagga |
46 |
Q |
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| T |
35253090 |
tttcaaatatctgagcagataatagactatatggagatgagga |
35253132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 8640054 - 8640106
Alignment:
| Q |
127 |
ataaaataatggaatgggtatatgtttatagcaatgaatttatataaatcaat |
179 |
Q |
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| T |
8640054 |
ataaaataacggaataggtataagtatatagcaatgaatttaaagaaatcaat |
8640106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 35264012 - 35264048
Alignment:
| Q |
4 |
tttcaaatatctgagcagataacagactatatcaaga |
40 |
Q |
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| T |
35264012 |
tttcaaatatctgagcagataatagactgtatcaaga |
35264048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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