View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_low_17 (Length: 319)

Name: NF18769_low_17
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_low_17
NF18769_low_17
[»] chr6 (3 HSPs)
chr6 (23-308)||(35029504-35029789)
chr6 (43-234)||(34970281-34970472)
chr6 (31-251)||(34952406-34952629)


Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 23 - 308
Target Start/End: Complemental strand, 35029789 - 35029504
Alignment:
Q  23 tgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35029789 tgtgtgacagtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcgagaggcaaattgtgaaaacaagtggattggatt 35029690  T
Q  123 tgttggaaaatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaa 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  35029689 tgttggaaaatggagtgatgagggtaagatcattcttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaa 35029590  T
Q  223 cttctctgattcttgaatatcaattctacccaacatcagctccgatttcacacaaatgtgtgatctatgatcgatttcatctcact 308  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||    
T  35029589 cttctctgattcttgaatatcaattctacccaacatcaactctgatttcacacaaatgtgtgatctatgatcgatttcatatcact 35029504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 43 - 234
Target Start/End: Complemental strand, 34970472 - 34970281
Alignment:
Q  43 aacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaaaatggagtgagg 142  Q
    |||||||||||||||||||||||||||||||||||||| || |||| ||||  ||||||||||||||| ||||||||||||||||| ||||||||||| |    
T  34970472 aacgtaggatttactatgggatacagttgtgaacgacaattacatctagagataaattgtgaaaacaaatggattggatttgttgggaaatggagtgatg 34970373  T
Q  143 agggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctgattc 234  Q
    |||||||||||||||| |||||| |||||||| ||||||| || || | |||||||| ||||| ||| || |||||||||||||||||||||    
T  34970372 agggtaagatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc 34970281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 31 - 251
Target Start/End: Complemental strand, 34952629 - 34952406
Alignment:
Q  31 agtgcatatcagaacgtaggatttactatgggatacagttgtgaacgacagttgcatcaagaggcaaattgtgaaaacaagtggattggatttgttggaa 130  Q
    |||||||||  ||||||||||||| | |  |||||||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  34952629 agtgcatatgggaacgtaggattttcaacaggatacagttgtgaactacagttgcatccagagacaaattgtgaaaacaaatggattggatttgttggaa 34952530  T
Q  131 aatggagtgaggagggtaagatcattcttatacttgttatgttgcttggaagactcaagagattcaacacggatgcaggtaatccatggaaacttctctg 230  Q
    |||||||||| ||||||||||||||||| ||| ||||||||||| ||||||| || || | |||||| | ||||| ||| ||  ||||||| ||||  ||    
T  34952529 aatggagtgatgagggtaagatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattg 34952430  T
Q  231 attcttg---aatatcaattctac 251  Q
    |||| ||   ||||||||||||||    
T  34952429 attcatgatcaatatcaattctac 34952406  T

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