View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18769_low_2 (Length: 595)
Name: NF18769_low_2
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 269 - 588
Target Start/End: Original strand, 1607577 - 1607896
Alignment:
| Q |
269 |
aaatgtaaatctggagattacaaaattttaacatattatttaggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacat |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1607577 |
aaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaat |
1607676 |
T |
|
| Q |
369 |
tataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaa |
468 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607677 |
tataattgctctttgtgtcttgttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaa |
1607776 |
T |
|
| Q |
469 |
cattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatacttaaattttaaatagaaaaatataaaat |
568 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607777 |
cattccataatttatctttcatttaattcttcctaaataaagttattgaataactttttagcagcacaatacttaaattttaaatagaaaaatataaaat |
1607876 |
T |
|
| Q |
569 |
cattgttagtacctttgcta |
588 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1607877 |
cattgttagtacctttgcta |
1607896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 269 - 551
Target Start/End: Original strand, 1630570 - 1630852
Alignment:
| Q |
269 |
aaatgtaaatctggagattacaaaattttaacatattatttaggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacat |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1630570 |
aaatgtaaatctggagattacaaaattttaacattttttttaggaaaaaattaaaacattatatacctaaaatattgaatatacttgaacatctacacat |
1630669 |
T |
|
| Q |
369 |
tataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaa |
468 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630670 |
tataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaa |
1630769 |
T |
|
| Q |
469 |
cattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatacttaaattttaa |
551 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630770 |
cactcaataatttatctttcatttaattcttcctgaataaagttattgaataaccttttagcagtacaatacttaaattttaa |
1630852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 269 - 585
Target Start/End: Original strand, 1624587 - 1624900
Alignment:
| Q |
269 |
aaatgtaaatctggagattacaaaattttaacatattatttaggaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacat |
368 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1624587 |
aaatttaaatctggagattacaaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaat |
1624686 |
T |
|
| Q |
369 |
tataattgctctttgtgtcttcttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaa |
468 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624687 |
tataattgctct--gtgtcttcttattttaaaattcatttttatatacccatttttaaccctatcatatttatattactctatgtatgtcacaaaataaa |
1624784 |
T |
|
| Q |
469 |
cattcaataatttatcttacatttaattcttcatgaataaagttattgaataaccttttagcagtacaatacttaaattttaaatagaaaaatataaaat |
568 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
1624785 |
cattcaataatttatctttcatttaattcttcctaaataaagttattgaataattttttagcagtacaatactt-aattttaaatagaaaaaaataaaat |
1624883 |
T |
|
| Q |
569 |
cattgttagtacctttg |
585 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
1624884 |
cattgttaatacctttg |
1624900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 1624344 - 1624530
Alignment:
| Q |
18 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
1624344 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagc |
1624443 |
T |
|
| Q |
118 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
1624444 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacggatccagaaattttgattagtatgac |
1624530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 1630319 - 1630505
Alignment:
| Q |
18 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630319 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
1630418 |
T |
|
| Q |
118 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgac |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |
|
|
| T |
1630419 |
ttcctttcatgcacagaaaaccaatttgaaaatgacccttcttctgtttctgcaagtgacgaatccaaaatttttgattagtatgac |
1630505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 1607323 - 1607509
Alignment:
| Q |
18 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
1607323 |
agcagcagcatttaaagcagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaagc |
1607422 |
T |
|
| Q |
118 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgac |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1607423 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagaaattttgattagtatgac |
1607509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 10819960 - 10819809
Alignment:
| Q |
18 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagc |
10819861 |
T |
|
| Q |
118 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10819860 |
ttcctttcatgcacagaaaaccaatttggaagtgacccttcttctatttctg |
10819809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 312 - 426
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
312 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcattttta |
411 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||| | |||||||| |||||||||| ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
|
| Q |
412 |
tcttcccattttcaa |
426 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 542 - 588
Target Start/End: Original strand, 1631340 - 1631386
Alignment:
| Q |
542 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagtacctttgcta |
1631386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
319 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacacattataattgctctttgtgtcttcttattttaaaattcatttttatc |
413 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||| ||||||||| |||||||||||| |||||||| |
|
|
| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 524 - 582
Target Start/End: Complemental strand, 10819219 - 10819162
Alignment:
| Q |
524 |
ttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagtacct |
582 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10819219 |
ttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagtacct |
10819162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 8e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 18785370 - 18785528
Alignment:
| Q |
18 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18785370 |
agcagcagcatttagagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagc |
18785469 |
T |
|
| Q |
118 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
176 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785470 |
ttcctttcatgcatagaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
18785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University