View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_low_23 (Length: 266)

Name: NF18769_low_23
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_low_23
NF18769_low_23
[»] chr1 (4 HSPs)
chr1 (2-132)||(28111471-28111601)
chr1 (18-131)||(24574040-24574149)
chr1 (22-59)||(2758303-2758340)
chr1 (149-185)||(2758224-2758260)
[»] chr3 (3 HSPs)
chr3 (25-132)||(11500472-11500579)
chr3 (26-132)||(36644760-36644871)
chr3 (2-89)||(22516788-22516876)
[»] chr2 (1 HSPs)
chr2 (18-129)||(15545162-15545274)
[»] chr5 (6 HSPs)
chr5 (29-131)||(21178305-21178408)
chr5 (18-132)||(10912081-10912205)
chr5 (79-180)||(11783032-11783130)
chr5 (2-116)||(25815227-25815342)
chr5 (13-90)||(11857367-11857445)
chr5 (9-59)||(36409757-36409807)
[»] chr7 (2 HSPs)
chr7 (27-111)||(3404023-3404108)
chr7 (2-102)||(25032789-25032890)
[»] chr8 (6 HSPs)
chr8 (68-132)||(3693497-3693561)
chr8 (69-185)||(18257431-18257547)
chr8 (25-132)||(34108906-34109017)
chr8 (2-137)||(32323337-32323473)
chr8 (22-92)||(29608694-29608765)
chr8 (2-47)||(3693452-3693497)
[»] chr4 (1 HSPs)
chr4 (22-132)||(36690229-36690339)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 28111601 - 28111471
Alignment:
Q  2 atattcattaatgatcaatattcttttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattctaaataatagttagtgtaattaagct 100  Q
    |||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||||||| |||||||||||| |||||    
T  28111601 atattcgttaaagattaatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcat-ctaaataaaagttagtgtaatcaagct 28111503  T
Q  101 tagaaacttgagtgtttaaggctaaataaatt 132  Q
    |||||||||||||||| ||| |||||||||||    
T  28111502 tagaaacttgagtgttcaagtctaaataaatt 28111471  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 24574149 - 24574040
Alignment:
Q  18 aatattcttttgtaaattgcaaacaaaacttttctttattttcattgttgtgcattctaaataatagttagtgtaattaagcttagaaacttgagtgttt 117  Q
    ||||||||||||||||||| ||||||||||||  ||| |    |||| | |||||||||||||||||  | |||||||||| |||||||||||||||||     
T  24574149 aatattcttttgtaaattgtaaacaaaactttatttttt----attggtatgcattctaaataataggcattgtaattaagattagaaacttgagtgttg 24574054  T
Q  118 aaggctaaataaat 131  Q
    ||||||||||||||    
T  24574053 aaggctaaataaat 24574040  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 2758340 - 2758303
Alignment:
Q  22 ttcttttgtaaattgcaaacaaaacttttctttatttt 59  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2758340 ttcttttgtaaattgcaaacaaaactttactttatttt 2758303  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 2758260 - 2758224
Alignment:
Q  149 ttcattatacaatatcataaaaagttcacagataata 185  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  2758260 ttcattatacaatatcatataaagttcacagaaaata 2758224  T

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Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 11500579 - 11500472
Alignment:
Q  25 ttttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattctaaataatagttagtgtaattaagcttagaaacttgagtgtttaaggct 123  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  11500579 ttttgtaaattgcaa-caaaactttactttatttttcattgttatgcattataaataatagctagtgtaattaagcttagaaacttgaatgtttaaggct 11500481  T
Q  124 aaataaatt 132  Q
    || ||||||    
T  11500480 aagtaaatt 11500472  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 132
Target Start/End: Original strand, 36644760 - 36644871
Alignment:
Q  26 tttgtaaattgcaaacaaaacttttctttatttt-cattgttgt----gcattctaaataatagttagtgtaattaagcttagaaacttgagtgtttaag 120  Q
    ||||| ||||||||||||||||||  |||||||| ||||||| |    |||||||||| |||||||| |||||||||||||||||||||||||||| |||    
T  36644760 tttgtcaattgcaaacaaaactttaatttatttttcattgttatatatgcattctaaacaatagttaatgtaattaagcttagaaacttgagtgttcaag 36644859  T
Q  121 gctaaataaatt 132  Q
    ||| ||||||||    
T  36644860 gctgaataaatt 36644871  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 22516788 - 22516876
Alignment:
Q  2 atattcattaatgatcaatattcttttgtaaattgcaaacaaaacttttcttta-ttttcattgttgtgcattctaaataatagttagt 89  Q
    |||||| || ||||| |||||| |||||  |||||||||||||| ||| ||||| |||||||| || ||||||||||||||||||||||    
T  22516788 atattcgttgatgattaatatttttttgataattgcaaacaaaaatttactttatttttcatttttatgcattctaaataatagttagt 22516876  T

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Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 15545162 - 15545274
Alignment:
Q  18 aatattcttttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattctaaataatagttagtgtaattaagcttagaaacttgagtgtt 116  Q
    ||||||||||||||| || ||||||||||||| ||||||||| |||| |  ||||||||||||||||||| ||||||||||||||||||||||||||||     
T  15545162 aatattcttttgtaagtttcaaacaaaactttactttatttttcattttaatgcattctaaataatagttggtgtaattaagcttagaaacttgagtgta 15545261  T
Q  117 taaggctaaataa 129  Q
     ||||||||||||    
T  15545262 caaggctaaataa 15545274  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 21178408 - 21178305
Alignment:
Q  29 gtaaattgcaaacaaaacttttcttta-ttttcattgttgtgcattctaaataatagttagtgtaattaagcttagaaacttgagtgtttaaggctaaat 127  Q
    ||||||||||||||||| ||| ||||| ||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||    
T  21178408 gtaaattgcaaacaaaattttactttagttttcattgttatgcattccaaataatagttggtgtaattaaggttagaaacttgagtgttcaaggctaaat 21178309  T
Q  128 aaat 131  Q
    ||||    
T  21178308 aaat 21178305  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 10912205 - 10912081
Alignment:
Q  18 aatattcttttgtaaattgcaaacaaaacttttcttta-ttttcattgttgtgcattctaaata---------atagttagtgtaattaagcttagaaac 107  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||| | |||||||||||         | |||||||  |||||||||||||||     
T  10912205 aatattcttttgtaaattgcaaacaaaactttactttatttttcattgttatccattctaaatactacatcataaagttagtacaattaagcttagaaat 10912106  T
Q  108 ttgagtgtttaaggctaaataaatt 132  Q
    ||||||| | |||||||| ||||||    
T  10912105 ttgagtgatcaaggctaattaaatt 10912081  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 11783032 - 11783130
Alignment:
Q  79 taatagttagtgtaattaagcttagaaacttgagtgtttaaggctaaataaatttagtcnnnnnnnntatttcattatacaatatcataaaaagttcaca 178  Q
    |||||||||||||||||||||||||||| |||||| || |||| |||||||||| ||||           ||||||||||||||||||||||||||||||    
T  11783032 taatagttagtgtaattaagcttagaaatttgagtcttaaaggttaaataaattgagtcaaaaaatg---ttcattatacaatatcataaaaagttcaca 11783128  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 116
Target Start/End: Complemental strand, 25815342 - 25815227
Alignment:
Q  2 atattcattaatgatcaatattcttttgtaaattgcaaacaaaacttttcttta-ttttcattgttgtgcattctaaataatagttagtgtaattaagct 100  Q
    |||||| |||| ||| ||| |||||||||||| ||||||||||| ||| ||||| |||| |||||| |||| |  |||||||| ||||| |||||||| |    
T  25815342 atattcgttaaggattaatgttcttttgtaaagtgcaaacaaaattttactttattttttattgttatgcaataaaaataataattagtataattaagtt 25815243  T
Q  101 tagaaacttgagtgtt 116  Q
    ||||||||||| ||||    
T  25815242 tagaaacttgaatgtt 25815227  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 11857445 - 11857367
Alignment:
Q  13 tgatcaatattcttttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattctaaataatagttagtg 90  Q
    |||| |||||| |||||||||||||||||||||| || ||||||||| ||||||| |||| | ||||||||||||||||    
T  11857445 tgattaatatttttttgtaaattgcaaacaaaacgttactttattttccattgttatgcaatttaaataatagttagtg 11857367  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 36409807 - 36409757
Alignment:
Q  9 ttaatgatcaatattcttttgtaaattgcaaacaaaacttttctttatttt 59  Q
    |||| ||| ||| |||||||||||||||||||||||||||| |||||||||    
T  36409807 ttaaggattaatgttcttttgtaaattgcaaacaaaactttactttatttt 36409757  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 111
Target Start/End: Complemental strand, 3404108 - 3404023
Alignment:
Q  27 ttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattctaaataatagttagtgtaattaagcttagaaacttga 111  Q
    ||||||||||||||||||| ||| ||||||||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||||    
T  3404108 ttgtaaattgcaaacaaaattttactttatttttcattgttatgcattataaataatagttagcgtaattaagcttagaaacttga 3404023  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 25032789 - 25032890
Alignment:
Q  2 atattcattaatgatcaatattcttttgtaaattgcaaacaaaacttttcttta-ttttcattgttgtgcattctaaataatagttagtgtaattaagct 100  Q
    |||||| |||| ||| ||| |||||||| ||||||||||||||| ||| ||||| ||||||||||| ||||||  ||||||||||| || ||||||| ||    
T  25032789 atattcgttaaggattaatgttcttttgcaaattgcaaacaaaagtttactttatttttcattgttatgcattaaaaataatagttggtataattaaact 25032888  T
Q  101 ta 102  Q
    ||    
T  25032889 ta 25032890  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 3693497 - 3693561
Alignment:
Q  68 tgcattctaaataatagttagtgtaattaagcttagaaacttgagtgtttaaggctaaataaatt 132  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  3693497 tgcattctaaataatagttagtgtaattaagcttaaaaacttgagtgttcaaggctaaataaatt 3693561  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 185
Target Start/End: Complemental strand, 18257547 - 18257431
Alignment:
Q  69 gcattctaaataatagttagtgtaattaagcttagaaacttgagtgtttaaggctaaataaatttagtcnnnnnnnntatttcattatacaatatcataa 168  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| |||          | |||||||||||||||| ||     
T  18257547 gcattctaaataatagttagtgtaaataaacttagaaacttgagtgttcaaggctaaataaattgagtaaaaaaaaaaagttcattatacaatatcttat 18257448  T
Q  169 aaagttcacagataata 185  Q
    |||||||||||| ||||    
T  18257447 aaagttcacagaaaata 18257431  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 34108906 - 34109017
Alignment:
Q  25 ttttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattct---aaataatagttagtgtaattaagcttagaaacttgagtgtttaag 120  Q
    |||||| |||||||||||||||||| ||||||||| ||||||| |||||| |   ||| |||||||| |||||||||||||||||| |||| |||| |||    
T  34108906 ttttgtcaattgcaaacaaaactttactttatttttcattgttatgcattattataaacaatagttattgtaattaagcttagaaaattgaatgttaaag 34109005  T
Q  121 gctaaataaatt 132  Q
    ||||| ||||||    
T  34109006 gctaagtaaatt 34109017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 32323473 - 32323337
Alignment:
Q  2 atattcattaatgatcaatattcttttgtaaattgcaaacaaaacttttctttatttt-cattgttgtgcattctaaataatagttagtgtaattaagct 100  Q
    ||||||||| |||||  | |||||| |||||||||||||||||| ||  ||| ||||| ||||||| |||||||||  ||||  ||||||||||||| ||    
T  32323473 atattcattgatgattcagattcttatgtaaattgcaaacaaaatttcacttaatttttcattgttatgcattctagttaatgattagtgtaattaatct 32323374  T
Q  101 tagaaacttgagtgtttaaggctaaataaatttagtc 137  Q
    || |||||| |||||| ||||||||||| ||| ||||    
T  32323373 taaaaacttaagtgttcaaggctaaatatattcagtc 32323337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 29608694 - 29608765
Alignment:
Q  22 ttcttttgtaaattgcaaacaaaacttttcttta-ttttcattgttgtgcattctaaataatagttagtgta 92  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||| |||||| |||| |||||||||||||    
T  29608694 ttcttttgtaaattgcaaacaaaactttactttatttttcattgttatgcattataaacaatagttagtgta 29608765  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 3693452 - 3693497
Alignment:
Q  2 atattcattaatgatcaatattcttttgtaaattgcaaacaaaact 47  Q
    |||||| |||| ||| ||||||||||||||||||||||| ||||||    
T  3693452 atattcgttaaggattaatattcttttgtaaattgcaaataaaact 3693497  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 36690339 - 36690229
Alignment:
Q  22 ttcttttgtaaattgcaaacaaaacttttctttattt-tcattgttgtgcattctaaataatagttagtgtaattaagcttagaaacttgagtgtttaag 120  Q
    |||||||||||||| ||||||||||||| |||||||| |||||||| ||||||  ||||||||||||||| ||||||||||||||||||||  | | |||    
T  36690339 ttcttttgtaaatttcaaacaaaactttactttatttctcattgttatgcattaaaaataatagttagtg-aattaagcttagaaacttgaaggctcaag 36690241  T
Q  121 gctaaataaatt 132  Q
    ||||| ||||||    
T  36690240 gctaagtaaatt 36690229  T

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