View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18769_low_29 (Length: 244)
Name: NF18769_low_29
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_29 |
 | |
|
| [»] scaffold0564 (1 HSPs) |
| | |
|
| [»] scaffold0316 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 31555995 - 31555776
Alignment:
| Q |
18 |
accacaaatgtttgagataaatacattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
31555995 |
accacaaatgtttgagataaatacattcttcttcttatacaataaacataacactctccgactgaaatttcacacgtctaaatacacaaaggttgtacat |
31555896 |
T |
|
| Q |
118 |
aaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacac |
217 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
31555895 |
aaggcacatatatattttaactcatccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacac |
31555796 |
T |
|
| Q |
218 |
ggtaaaaagggattcatctc |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
31555795 |
agtaaaaagggatccatctc |
31555776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0564 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0564
Description:
Target: scaffold0564; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 2439 - 2220
Alignment:
| Q |
18 |
accacaaatgtttgagataaatacattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
2439 |
accacaaatgtttgagataaatacattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcctaaatacacaaaggttgtatat |
2340 |
T |
|
| Q |
118 |
aaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacac |
217 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2339 |
aaggcacatatatattttaactcatccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacac |
2240 |
T |
|
| Q |
218 |
ggtaaaaagggattcatctc |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
2239 |
agtaaaaagggatccatctc |
2220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 34210458 - 34210239
Alignment:
| Q |
18 |
accacaaatgtttgagataaatacattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
34210458 |
accacaaatgtttgagataaatacattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcctaaatacacaaaggttgtatat |
34210359 |
T |
|
| Q |
118 |
aaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacac |
217 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
34210358 |
aaggcacatatatattttaactcatccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacac |
34210259 |
T |
|
| Q |
218 |
ggtaaaaagggattcatctc |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
34210258 |
agtaaaaagggatccatctc |
34210239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 79 - 237
Target Start/End: Original strand, 39821622 - 39821780
Alignment:
| Q |
79 |
ctgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggcta |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
39821622 |
ctgaaatttcacacgcctatatacacaaaggttgtacataaggcacatatatattttaactcacccgacttttttatactattgttgaattgggaggcta |
39821721 |
T |
|
| Q |
179 |
agaagaattttaaaaggttgaactctgaataagttacacggtaaaaagggattcatctc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
39821722 |
tgaagaattttaaaaggttgaactctgaataagttacacagtaaaaagggatccatctc |
39821780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 4871 - 5090
Alignment:
| Q |
18 |
accacaaatgtttgagataaatacattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||||| || |||||||||||||||| || |
|
|
| T |
4871 |
accacaaatgtttgagataaatacattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcttaaatacacaaaggttgtatat |
4970 |
T |
|
| Q |
118 |
aaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacac |
217 |
Q |
| |
|
|||||||||||||||||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
4971 |
aaggcacatatatattttaactcatccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacac |
5070 |
T |
|
| Q |
218 |
ggtaaaaagggattcatctc |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
5071 |
agtaaaaagggatccatctc |
5090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 32546152 - 32545933
Alignment:
| Q |
18 |
accacaaatgtttgagataaatacattcttcttcttatacaatacacacagcactctccgactgaaatttcacacgcctatatacacaaaggttgtacat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
32546152 |
accacaaatgtttgagataaatacattcttcttcttatacaataaatataatactctccgactgaaatttcacacgcctaaatacacaaaggttgtatat |
32546053 |
T |
|
| Q |
118 |
aaggcacatatatattttaactcacctgacnnnnnnnatctattgttgaattgggaggctaagaagaattttaaaaggttgaactctgaataagttacac |
217 |
Q |
| |
|
|||||| ||||||||||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
32546052 |
aaggcatatatatattttaactcatccgacttttttatactattgttgaattggaaggctatgaagaattttaaaaggttgaactctgaaaaggttacac |
32545953 |
T |
|
| Q |
218 |
ggtaaaaagggattcatctc |
237 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
32545952 |
agtaaaaagggatccatctc |
32545933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University