View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_3 (Length: 583)
Name: NF18769_low_3
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 575
Target Start/End: Complemental strand, 28418461 - 28417908
Alignment:
| Q |
20 |
taagcatggagaggataacttgtaagagaagtcaagaggttttaatgatatttctaaaattaaactgaagttgtttatatttggatcaatatgttttacc |
119 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418461 |
taagcatggagaggataacttgtaaaagaagtcaagaggttttaatgatatttctaaaattaaactgaagttgtttatatttggatcaatatgttttacc |
28418362 |
T |
|
| Q |
120 |
ttggtcataaatnnnnnnnttctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttca |
219 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418361 |
ttggtcataaataaaaaaattctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttca |
28418262 |
T |
|
| Q |
220 |
tatnnnnnnngtaaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaa |
319 |
Q |
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||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418261 |
tataaaaaaagtcaatgtgtacaagagatcaagaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaa |
28418162 |
T |
|
| Q |
320 |
aacattcttcctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcag |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
28418161 |
aacattcttcctaaacctcaccaacaatttatttatctttcagaatctttgaatc----ataaaagcttttgacagtggaggaaatggtagaaggatcag |
28418066 |
T |
|
| Q |
420 |
ccatttctctc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttct |
517 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28418065 |
ccatttctctcatattagtttgcatgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttct |
28417966 |
T |
|
| Q |
518 |
ccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
575 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
28417965 |
ccacatacaaccatccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28417908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 67 - 575
Target Start/End: Original strand, 28584797 - 28585326
Alignment:
| Q |
67 |
atatttctaaaattaaactgaagttgtttatatttggatcaatatgttttaccttggtcataaatnnnnnnn------ttctaagcaaaacaaaagagat |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
28584797 |
atatttctaaaattaaactgaagttgtttatatttggaccaa-atgttttacctcggtcataaaaaatataaagaaaattctaagcaaaacaaaagagat |
28584895 |
T |
|
| Q |
161 |
aacttgtaaaagaagtcaagagcatgatacaaatcaacacactcttatttacagtttcatatnnnnnnngta----------------aatgtgtacaag |
244 |
Q |
| |
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|||||||||||||||| ||||||||| |||||| ||||| |||| || ||||| |||||||| ||| |||||||||||| |
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| T |
28584896 |
aacttgtaaaagaagttaagagcatgctacaaagcaacaaactcatacttacattttcatatcaaaaaagtatacatgaacatattccaatgtgtacaag |
28584995 |
T |
|
| Q |
245 |
agatcaa-gaacatgctactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtc-gttaaaacattcttcctaaacctcacca |
342 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28584996 |
agatcaaagagcatgctactatccaaagcaacactctagaagacaatgatattctcttgtttttcacagtccgttaaaacattcttcctaaacctcacca |
28585095 |
T |
|
| Q |
343 |
acaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgc |
440 |
Q |
| |
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||||||||||||||||||| ||| ||||||||||| |||||||||||| || || |||||||||||||||||||||||||||||||| |||||||| |
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| T |
28585096 |
acaatttatttatctttcaaaatctttgaatcata----aaagcttttgacggtcgaagaaatggtagaaggatcagccatttctctcatattagtttgc |
28585191 |
T |
|
| Q |
441 |
atgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatg |
540 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585192 |
atgtgttgaacaggtgggataagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacatacaaccatccattgatg |
28585291 |
T |
|
| Q |
541 |
gtgcaacaaacatcggcttctcgtagtcctatgct |
575 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |
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| T |
28585292 |
gtgcaacaaacatcggcttctcgtagtcccatgct |
28585326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 233 - 575
Target Start/End: Complemental strand, 28404814 - 28404473
Alignment:
| Q |
233 |
aatgtgtacaagagatcaagaacatgc----tactatccaaagcaacactctaaaagacaatgatattcttttgtttttcacagtcgttaaaacattctt |
328 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| || |
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| T |
28404814 |
aatgtgtacatgagatcaagagcatgcatgctactgtccaaagcaacactctaggagacaatgatattcttttgttttgtacaatggttataac---ttt |
28404718 |
T |
|
| Q |
329 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatcatatataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctc |
428 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||||||||||||| |
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| T |
28404717 |
cctaaacctcaccaacaatttatttatctttcagaatatttgaatc----ataaaagcttttgacggtcgaaaaaatggtagaaggatcagccatttctc |
28404622 |
T |
|
| Q |
429 |
tc--attagtttgcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatggagttctgttctgtgaaagggtttctccacataca |
526 |
Q |
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|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28404621 |
tcatatttgttggcatgtgttgaacaggtgggatgagagtaacaccaagctcttcaatgctcatgaagttctgttctgtgaaagggtttctccacataca |
28404522 |
T |
|
| Q |
527 |
accatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
575 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
28404521 |
accatccattgatggtgcaacgaacatcggcttctcgtagtcccatgct |
28404473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 379 - 575
Target Start/End: Original strand, 28580128 - 28580326
Alignment:
| Q |
379 |
ataaaagcttttgacagtggatgaaatggtagaaggatcagccatttctctcat--tagtttgcatgtgttgaacaggtgggatgagagtaacaccaagc |
476 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||| |||| | ||||||||||||| |
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| T |
28580128 |
ataaaagcttttgacattggaggaaatggtagaaggatctgccatttctctcatattagttggcatgtgttcaacaggttggataacagtaacaccaagc |
28580227 |
T |
|
| Q |
477 |
tcttcaatgctcatggagttctgttctgtgaaagggtttctccacatacaaccatccattgatggtgcaacaaacatcggcttctcgtagtcctatgct |
575 |
Q |
| |
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| |||||| ||||| | | |||||||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||||||||||||| ||||| |
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| T |
28580228 |
ttttcaatcctcatcaattgttgttctgtgaaaggatttctccacatggcatcattcattgacggtgcaacaaacatcggcttctcgtagtcccatgct |
28580326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 28404922 - 28404870
Alignment:
| Q |
141 |
ctaagcaaaacaaaagagataacttgtaaaagaagtcaagagcatgatacaaa |
193 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| ||| |||||| |
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|
| T |
28404922 |
ctaagcaaaccaaaagagataacttgtaaaaggggtcaagagtatgctacaaa |
28404870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 534 - 569
Target Start/End: Original strand, 27834771 - 27834806
Alignment:
| Q |
534 |
attgatggtgcaacaaacatcggcttctcgtagtcc |
569 |
Q |
| |
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||||||||||||||||||| |||||||||||||||| |
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|
| T |
27834771 |
attgatggtgcaacaaacaccggcttctcgtagtcc |
27834806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 28405014 - 28404970
Alignment:
| Q |
55 |
gaggttttaatgatatttctaaaattaaactgaagttgtttatat |
99 |
Q |
| |
|
||||||| |||||||||| |||||||||||| ||||| ||||||| |
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|
| T |
28405014 |
gaggtttcaatgatatttataaaattaaactaaagttatttatat |
28404970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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