View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_30 (Length: 238)
Name: NF18769_low_30
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 47247848 - 47247632
Alignment:
| Q |
1 |
cttagataagactaaatatgannnnnnnncaacaaagttatgtttcatacatttgaaggcacacaaaataaacaaaaacgaactcagtatattgctcatc |
100 |
Q |
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| T |
47247848 |
cttagataagactacatatgattttttttcaacaaagttatgtttcatagatttgaaggcacacaaaataaacaaaaacgaactcagtatattgctcatc |
47247749 |
T |
|
| Q |
101 |
acatatatcatgtttctgcatttataaataaacaaaaataatgtgcagacctcaacctttctaattacatagccaatcatccttgccacttcaatagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
47247748 |
acatatatcatgtttctgcatttataaataaacaaaaataatgtgcagacctcaacctttctaattacatagtcaatcatccttgccacttcaatagaaa |
47247649 |
T |
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| Q |
201 |
gattaggcaatttgcat |
217 |
Q |
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||||||||||||||||| |
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| T |
47247648 |
gattaggcaatttgcat |
47247632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 42311565 - 42311780
Alignment:
| Q |
2 |
ttagataagactaaatatgannnnnnnncaacaaagttatgtttcatacatttgaaggcacacaaaataaacaaaaacgaactcagtatattgctcatca |
101 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
42311565 |
ttagataagactaaatatgattttttttcaacaaagtaatgtttcatacatttgaaggcacgcaaaataaacaaaaacgaactcagtatactgctcatca |
42311664 |
T |
|
| Q |
102 |
catatatcatgtttctgcatttataaataaacaaaaataatgtgcagacctcaacctttctaattacatagccaatcatccttgccacttcaatagaaag |
201 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42311665 |
catatatcatgtttctgcatttatgaatagacaaaaataatgtgcagacctcaacctttataattacatagccaatcatccttgccacttcaatagaaag |
42311764 |
T |
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| Q |
202 |
attaggcaatttgcat |
217 |
Q |
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|||||||||||||||| |
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| T |
42311765 |
attaggcaatttgcat |
42311780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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