View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18769_low_31 (Length: 238)
Name: NF18769_low_31
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_31 |
 | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0573 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 24208720 - 24208897
Alignment:
| Q |
18 |
ctatttacatacattgttatagtagacctcttacaatcatttcacgaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24208720 |
ctatttacatacattgttatagtagacctcttacaatcatttcacgaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattat |
24208819 |
T |
|
| Q |
118 |
ttcaaaagttttagcatctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24208820 |
ttcaaaagttttagcatctggaatgcaaccactggctttcatttttgataccatggccaatgcaccatcaaacaagcc |
24208897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 24218948 - 24218984
Alignment:
| Q |
191 |
aagcccttcttacaaaatcctttgatcatagtattat |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24218948 |
aagcccttcttacaaaatcctttgatcatagtattat |
24218984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 34)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 29894978 - 29894810
Alignment:
| Q |
52 |
aatcatttcacgaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactg |
151 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| |||||||||||| ||| |||| ||||||||| ||||| ||||||||||||||||| | || |
|
|
| T |
29894978 |
aatcatttcacgaagtttctccgccttatcattttcatctttatcaaacagggaacggatgattatttcataagttacagcatctggaatgcaactattg |
29894879 |
T |
|
| Q |
152 |
gctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||||||| | || | |||||| |||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
29894878 |
tctttcatttttgacaacaaagtcaatgcttcatcaaacaagcccttgttacaaaacccatggatcata |
29894810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 24731297 - 24731112
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||| |||||| |||| |||| || |||| |||| |||||| ||||||| |||||||||||| |
|
|
| T |
24731297 |
agtagacctcttgcaatcatttcacgaagaagtttctctgccatatcattttcatctttttcgaacagagaaaggataactatttcataagttttagcat |
24731198 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||| ||| || ||| ||||||||| | || |||||| || |||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
24731197 |
ttggaatgcatccattgtcttccatttttgacagcaaggccaacgctgcatcaaacaagcccttgacacaaaacccttggatcata |
24731112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 29882849 - 29882692
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
29882849 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatctggaatgcatccattctcttccatttt |
29882750 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||| || | |||||||||||||| | |||||| |||| ||||||| |
|
|
| T |
29882749 |
tgacagcaaggccaacgcttcgtcaaacaagcccttgtcacaaaacccttggatcata |
29882692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 29903651 - 29903494
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
29903651 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatctggaatgcatccattctcttccatttt |
29903552 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||| | |||||||||||||||| | |||||| |||| ||||||| |
|
|
| T |
29903551 |
tgacagcaaggccaacacttcatcaaacaagcccttgtcacaaaacccttggatcata |
29903494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 29910005 - 29909848
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
29910005 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatctggaatgcatccattctcttccatttt |
29909906 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||| || | |||||||||||||| | |||||| |||| ||||||| |
|
|
| T |
29909905 |
tgacagcaaggccaacgcttcgtcaaacaagcccttgtcacaaaacccttggatcata |
29909848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 29912386 - 29912229
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
29912386 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatctggaatgcatccattctcttccatttt |
29912287 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||| || | |||||||||||||| | |||||| |||| ||||||| |
|
|
| T |
29912286 |
tgacagcaaggccaacgcttcgtcaaacaagcccttgtcacaaaacccttggatcata |
29912229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 29914406 - 29914249
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
29914406 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatctggaatgcatccattctcttccatttt |
29914307 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||| || ||||||||||| |||| | |||||| |||| ||||||| |
|
|
| T |
29914306 |
tgacagcaaggccaacgcttcatcaaacaagtccttgtcacaaaacccttggatcata |
29914249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 29078969 - 29078784
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| |||| |||||| |||| |||| | |||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
29078969 |
agtagacctctcgcgatcatttcacgaagaagtttctctgccatatcattttcatcttttttgaacagagaaaggataattatttcataagttttagcat |
29078870 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||| | || |||||| || ||| |||||||||||| |||||| |||| ||||||| |
|
|
| T |
29078869 |
ctggaatgcagccattgtcttccatttttgacagcaaggccaacgcttcattaaacaagcccttgacacaaaacccttggatcata |
29078784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 29357564 - 29357721
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| | |||| |||| |||| | |||| |||| |||||||||||||| |||||||||||| ||||||||| ||| || ||| |||||| |
|
|
| T |
29357564 |
gaagtttctctgccatctcattttcatcttttttgaacagagaaaggataattatttcataagttttagcatttggaatgcagccattgtcttccatttt |
29357663 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||| || || ||| || |||||||||||||||| | |||||| |||| ||||||| |
|
|
| T |
29357664 |
tgatagcaaggtcaacgcttcatcaaacaagcccttgtcacaaaagccttggatcata |
29357721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 29867063 - 29866906
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||| |||| |||| ||||||||| ||||| |||| ||||| ||||| | || |||||||||| |
|
|
| T |
29867063 |
gaagtttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttt |
29866964 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||||| |||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
29866963 |
tgacaacaaagccaatgcttcatcaaacaagcccttgttacaaaacccatggatcata |
29866906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 29116703 - 29116541
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| |||| |||||| |||| |||| | |||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
29116703 |
agtagacctctcgcgatcatttcacgaagaagtttctctgccatatcattttcatcttttttgaacagagaaaggataattatttcataagttttagcat |
29116604 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagccct |
197 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||| | || |||||| || ||| ||||||||||| |
|
|
| T |
29116603 |
ctggaatgcagccattgtcttccatttttgacagcaaggccaacgcttcattaaacaagccct |
29116541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 29210978 - 29211122
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| ||||||||| | |||| |||| | |||||| |||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
29210978 |
gaagtttctctgccatatcattttcaccttttttgaacagagaaagcttaattaattcataagttttagcatctggaatgcatccattctcttccatttt |
29211077 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaa |
207 |
Q |
| |
|
||| | || |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
29211078 |
tgacagcaaggccgatgcttcatcaaacaagcccttcttacaaaa |
29211122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 24889803 - 24889988
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||| |||| | |||| |||| |||| || |||| |||| | |||| || |||| |||||||||||| |
|
|
| T |
24889803 |
agtagccctctcacaatcatttcacgaagaagtttctctgccgtgtcattttcatctttttcgaacagagaaagaataactagttcataagttttagcat |
24889902 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||||||| || ||| ||||||||| | || ||||||||| |||||| |||||||| | |||||| |||| ||||||| |
|
|
| T |
24889903 |
ttggaatgcaaccattgtcttccatttttgacagcaaggccaatgctttatcaaagaagcccttgtcacaaaacccttggatcata |
24889988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 29074205 - 29074020
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| |||| |||||| |||| |||| | |||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
29074205 |
agtagacctctcgcgatcatttcacgaagaagtttctctgccatatcattttcatcttttttgaacagagaaaggataattatttcataagttttagcat |
29074106 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||| ||| || ||| ||||||||| | || |||||| || ||| |||||||||||| |||||| |||| ||||||| |
|
|
| T |
29074105 |
ctggaatgcggccattgtcttccatttttgacagcaaggccaacgcttcattaaacaagcccttgacacaaaacccttggatcata |
29074020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 197
Target Start/End: Complemental strand, 29099784 - 29099623
Alignment:
| Q |
39 |
gtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatc |
135 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| |||| |||||| |||| |||| | |||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
29099784 |
gtagacctctcgcgatcatttcacgaagaagtttctctgccatatcattttcatcttttttgaacagagaaaggataattatttcataagttttagcatc |
29099685 |
T |
|
| Q |
136 |
tggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagccct |
197 |
Q |
| |
|
||||||||| ||| || ||| ||||||||| | || |||||| || ||| ||||||||||| |
|
|
| T |
29099684 |
tggaatgcagccattgtcttccatttttgacagcaaggccaacgcttcattaaacaagccct |
29099623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 29106778 - 29106593
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| |||| |||||| |||| |||| | |||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
29106778 |
agtagacctctcgcgatcatttcacgaagaagtttctctgccatatcattttcatcttttttgaacagagaaaggataattatttcataagttttagcat |
29106679 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||| ||| || ||| ||||||||| | || |||||| || ||| |||||||||||| |||||| |||| ||||||| |
|
|
| T |
29106678 |
ctggaatgcggccattgtcttccatttttgacagcaaggccaacgcttcattaaacaagcccttgacacaaaacccttggatcata |
29106593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 29348183 - 29348300
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||| ||||||||| ||| || ||| |||||| |
|
|
| T |
29348183 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatttggaatgcagccattgtcttccatttt |
29348282 |
T |
|
| Q |
163 |
tgataccatggccaatgc |
180 |
Q |
| |
|
||| | || ||||||||| |
|
|
| T |
29348283 |
tgacagcaaggccaatgc |
29348300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 220
Target Start/End: Original strand, 24271536 - 24271706
Alignment:
| Q |
52 |
aatcatttcacgaagt--ttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccac |
149 |
Q |
| |
|
||||||||||||||| |||| |||||||||| |||| | |||||||||| |||| |||| ||||||||| ||||| ||||| ||||||||||| | |
|
|
| T |
24271536 |
aatcatttcacgaagaagttctccgccttatcattttcatcgttatcaaacagagaacggatgattatttcataagttacagcatttggaatgcaacaat |
24271635 |
T |
|
| Q |
150 |
tggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
|| ||||||||||||| | || | || ||| |||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
24271636 |
tgtctttcatttttgacaacaaagtcattgcttcatcaaacaagcccttgttacaaaacccatggatcata |
24271706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 220
Target Start/End: Complemental strand, 29887700 - 29887554
Alignment:
| Q |
74 |
gccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttttgataccatgg |
173 |
Q |
| |
|
|||||||||| |||| | |||||||||| |||| |||| ||||||||| ||||| |||| ||||| ||||| | || ||||||||||||| | || | |
|
|
| T |
29887700 |
gccttatcattttcatcattatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaag |
29887601 |
T |
|
| Q |
174 |
ccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| || | ||||||| |
|
|
| T |
29887600 |
ccaatgcttcatcaaacaagcccttgttacaaaacccatggatcata |
29887554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 195
Target Start/End: Original strand, 24263311 - 24263469
Alignment:
| Q |
40 |
tagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatct |
136 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |||||||||| |||| |||||||||||| |||| ||| ||||||||| |||| | || ||| |
|
|
| T |
24263311 |
tagacctcttgtaatcatttcacgaagaagtttctccgccttatcattttcatctttatcaaacagagaacagatgattatttcataagtaatggcgtct |
24263410 |
T |
|
| Q |
137 |
ggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcc |
195 |
Q |
| |
|
|||||||||| | || ||||||||||||| | || | |||||| ||||||||||||| |
|
|
| T |
24263411 |
ggaatgcaactattgtctttcatttttgacaacaaagacaatgcttcatcaaacaagcc |
24263469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 24886123 - 24886308
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacg---aagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||| |||| |||||| |||| |||| || |||| |||| |||||| ||||||| || ||||||||| |
|
|
| T |
24886123 |
agtagacctctcgcgatcatttcacggagaagtttctctgccatatcattttcatctttttcgaacagagaaaggataactatttcataaattttagcat |
24886222 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
|||||||||| ||| || ||| |||||| || | || |||||| || | | |||||| ||||| | |||||| |||| ||||||| |
|
|
| T |
24886223 |
ctggaatgcagccattgtcttccattttggacagcaaggccaacgcttccttaaacaaacccttgtcacaaaacccttggatcata |
24886308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 220
Target Start/End: Complemental strand, 29085446 - 29085275
Alignment:
| Q |
52 |
aatcatttcacgaa---gtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaacca |
148 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| |||| ||||| |||| |||| |||| |||||||| ||||| || | ||||||||||| | |
|
|
| T |
29085446 |
aatcatttcacgaaaaagtttctccgccttatcattttcattgttatccaacagagaacggatggttatttcataagttacggcgtttggaatgcaacta |
29085347 |
T |
|
| Q |
149 |
ctggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| ||||||||||||| | || | |||||| ||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
29085346 |
ctgtctttcatttttgacaacaaagacaatgcttcatcaaacaagcccttcttacaaaacccatggatcata |
29085275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 29835600 - 29835472
Alignment:
| Q |
92 |
ttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaaca |
191 |
Q |
| |
|
|||||||||| |||| |||| ||||||||| ||||| |||| ||||| ||||| | || ||||||||||||| | || |||||||| ||||||||| |
|
|
| T |
29835600 |
ttatcaaacagagaacggatgattatttcataagttaaggcatttggaaagcaactattgtctttcatttttgacaacaaagccaatgcttcatcaaaca |
29835501 |
T |
|
| Q |
192 |
agcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||| |||||||| || | ||||||| |
|
|
| T |
29835500 |
agcccttgttacaaaacccatggatcata |
29835472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 29930507 - 29930378
Alignment:
| Q |
41 |
agacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctg |
137 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||| |||||| |||| ||| ||||| | ||| |||||||||||||| |||||||||||| || |
|
|
| T |
29930507 |
agacctctcacgatcatttcacgaagaaatttctctgccatatcattttcatcttcttcaaatagtgaagggataattatttcataagttttagcatttg |
29930408 |
T |
|
| Q |
138 |
gaatgcaaccactggctttcatttttgata |
167 |
Q |
| |
|
||||||| ||| || | | ||||||||||| |
|
|
| T |
29930407 |
gaatgcagccattgtcgtccatttttgata |
29930378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 30126608 - 30126773
Alignment:
| Q |
34 |
ttatagtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagtttta |
130 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| |||||||||| |||| |||||||||||| |||| |||| ||||||||| ||||| | |
|
|
| T |
30126608 |
ttatagtagatctcttgtaatcatttcacgaataattttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagttaca |
30126707 |
T |
|
| Q |
131 |
gcatctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagccc |
196 |
Q |
| |
|
| | ||||||||||| | || ||||||||| | | | || |||||||| |||||||||||||| |
|
|
| T |
30126708 |
acgtttggaatgcaactattgtctttcatttctaacaacaaagccaatgcttcatcaaacaagccc |
30126773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 207
Target Start/End: Original strand, 28926132 - 28926276
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||| |||| |||| ||||||||| |||| || | ||||||||||||| | ||| |||||| |
|
|
| T |
28926132 |
gaagtttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagtaacggcgtttggaatgcaaccattttcttccatttt |
28926231 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaa |
207 |
Q |
| |
|
||| | ||| |||||||| || |||||| ||| || |||||||| |
|
|
| T |
28926232 |
tgacaacatagccaatgcttcaccaaacatgccgttgttacaaaa |
28926276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 30999555 - 30999740
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||| ||||| |||||||||||||||| ||||| |||| | |||| |||| |||| || || | |||| | |||| || |||| || ||||||||| |
|
|
| T |
30999555 |
agtagccctctcgcaatcatttcacgaagaagtttctctgccatgtcattttcatctttttcgaagagagaaggaataactagttcataaattttagcat |
30999654 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||||||| || ||| ||||||||| | || |||||| | |||||||||||||| | | |||||| |||| ||||||| |
|
|
| T |
30999655 |
ttggaatgcaaccattgtcttccatttttgacaacaaggccaacacttcatcaaacaagcccgtgtaacaaaacccttggatcata |
30999740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 29946854 - 29946770
Alignment:
| Q |
61 |
acgaagtttctttgccttatcatatt-cacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgca |
144 |
Q |
| |
|
|||||||||| || |||||||| || ||||||||||||||||||||||||||||| || || ||||| || ||||||||||| |
|
|
| T |
29946854 |
acgaagtttccatgtcttatcatttttcacctttatcaaacaaagaatggataattgttccataagttgcagtgtctggaatgca |
29946770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 165
Target Start/End: Original strand, 15714562 - 15714679
Alignment:
| Q |
51 |
caatcatttcacg---aagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaacc |
147 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||| | || | ||| | || | |||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
15714562 |
caatcatttcacgcagaagtttctctgccttatcattctcatcatttttaaagagagcacggataattgtttcataagttacagcatctggaatgcaacc |
15714661 |
T |
|
| Q |
148 |
actggctttcatttttga |
165 |
Q |
| |
|
| || ||| ||||||||| |
|
|
| T |
15714662 |
attgtcttccatttttga |
15714679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 29366006 - 29366069
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagt |
126 |
Q |
| |
|
||||||||| |||||||||| |||| ||||||||||||||||| ||| ||||||||| |||| |
|
|
| T |
29366006 |
gaagtttctccgccttatcattttcatctttatcaaacaaagaacagatgattatttcataagt |
29366069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 29898519 - 29898402
Alignment:
| Q |
34 |
ttatagtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagtttta |
130 |
Q |
| |
|
||||| ||| ||||| | ||||||||||||||| ||||| |||||||||| |||| |||||||||||| |||| ||| ||||||||| |||| | |
|
|
| T |
29898519 |
ttataataggcctctcataatcatttcacgaagaagtttctccgccttatcattttcatctttatcaaacagagaacagatgattatttcataagtaatg |
29898420 |
T |
|
| Q |
131 |
gcatctggaatgcaacca |
148 |
Q |
| |
|
|| | ||||||||||||| |
|
|
| T |
29898419 |
gcgtttggaatgcaacca |
29898402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 220
Target Start/End: Complemental strand, 25451567 - 25451381
Alignment:
| Q |
34 |
ttatagtagacctcttacaatcatttcacgaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagca |
133 |
Q |
| |
|
|||||||| ||| || |||||| ||||| ||||||| |||||||||| | |||||||||||||| | |||| ||||||| ||| | ||||| | |
|
|
| T |
25451567 |
ttatagtacaccgctcgcaatcaattcacaaagtttccttgccttatccttttcacctttatcaagaagagaactgataattgttttataagttacggtg |
25451468 |
T |
|
| Q |
134 |
tctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||||||||||||| || ||||||| ||||| | || | ||| || |||||||||||||||| |||||||||| | ||||||| |
|
|
| T |
25451467 |
tctggaatgcaactgttgtctttcatatttgacagcaatgtcaaagcttcatcaaacaagccctttctacaaaatccatggatcata |
25451381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 29949450 - 29949482
Alignment:
| Q |
34 |
ttatagtagacctcttacaatcatttcacgaag |
66 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
29949450 |
ttatagtagacctctaacaatcatttcacgaag |
29949482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 29953247 - 29953279
Alignment:
| Q |
34 |
ttatagtagacctcttacaatcatttcacgaag |
66 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
29953247 |
ttatagtagacctctaacaatcatttcacgaag |
29953279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 218
Target Start/End: Original strand, 15062433 - 15062616
Alignment:
| Q |
38 |
agtagacctcttacaatcatttcacgaag---tttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcat |
134 |
Q |
| |
|
||||||||||| | |||||||||||||| ||||| ||| ||||||| |||| |||| ||||| | |||||| |||| |||||| ||||| |||||| |
|
|
| T |
15062433 |
agtagacctctcgctatcatttcacgaagaagtttctctgctttatcattttcatctttttcaaagagagaatgaataagtatttcgtaagttatagcat |
15062532 |
T |
|
| Q |
135 |
ctggaatgcaaccactggctttcatttttgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatca |
218 |
Q |
| |
|
|||||||||||| || ||||||||||||| | |||||||||| | ||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
15062533 |
taggaatgcaaccattgtctttcatttttgacagcatggccaatccttcatcaaagaagcccttgttacaaaatccattgatca |
15062616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Complemental strand, 22757 - 22600
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| |||| |||||||||||||| |||||||||||||||||||||| ||| | ||| |||||| |
|
|
| T |
22757 |
gaagtttctctgccatatcattttcatctttttcgaacagagaaaggataattatttcataagttttagcatctggaatgcatccattctcttccatttt |
22658 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaatcctttgatcata |
220 |
Q |
| |
|
||| | || |||||| || | |||||||||||||| | |||||| |||| ||||||| |
|
|
| T |
22657 |
tgacagcaaggccaacgcttcgtcaaacaagcccttgtcacaaaacccttggatcata |
22600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 53224 - 53305
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgca |
144 |
Q |
| |
|
||||||||| |||| |||||| |||| |||| || |||| ||| |||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
53224 |
gaagtttctctgccatatcattttcatctttttcgaacagagacaggataattatttcataagttttagcatttggaatgca |
53305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0573 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0573
Description:
Target: scaffold0573; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 4551 - 4407
Alignment:
| Q |
63 |
gaagtttctttgccttatcatattcacctttatcaaacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttt |
162 |
Q |
| |
|
||||||||| |||||||||| |||| |||||||||||| |||| |||| ||||||||| |||| || | ||||||||||||| | ||| |||||| |
|
|
| T |
4551 |
gaagtttctccgccttatcattttcatctttatcaaacagagaacggatgattatttcataagtaacggcgtttggaatgcaaccattttcttccatttt |
4452 |
T |
|
| Q |
163 |
tgataccatggccaatgcgccatcaaacaagcccttcttacaaaa |
207 |
Q |
| |
|
||| | ||| |||||||| || |||||| ||| || |||||||| |
|
|
| T |
4451 |
tgacaacatagccaatgcttcaccaaacatgccgttgttacaaaa |
4407 |
T |
|
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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 10130516 - 10130449
Alignment:
| Q |
98 |
aacaaagaatggataattatttcaaaagttttagcatctggaatgcaaccactggctttcatttttga |
165 |
Q |
| |
|
||||||||| | |||||||||||| |||||||||||| ||| ||||| ||| || ||||||||||||| |
|
|
| T |
10130516 |
aacaaagaaagaataattatttcataagttttagcatttggcatgcacccattgtctttcatttttga |
10130449 |
T |
|
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