View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_4 (Length: 496)
Name: NF18769_low_4
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 21 - 486
Target Start/End: Complemental strand, 34730229 - 34729764
Alignment:
| Q |
21 |
agcgtaccccttattaaggcatatgatacaaataatgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactag |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34730229 |
agcgtaccccttattaaggcatatgatacaaataatgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactag |
34730130 |
T |
|
| Q |
121 |
atttgtatgagtatgccattcttgaaaacctgattttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccactttta |
220 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34730129 |
atttgtatgagtatgccattctttaaaacctgattttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccactttta |
34730030 |
T |
|
| Q |
221 |
gttgttttggaggtttgttgtagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgc |
320 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34730029 |
gttgttttgtaggtttgttgtagttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttataacttctaatatattttggttccgc |
34729930 |
T |
|
| Q |
321 |
agatggaaagcaacagatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagat |
420 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34729929 |
agatggaaagcaacagatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagat |
34729830 |
T |
|
| Q |
421 |
tttctcttgaagcctgcaaaagacaacgctaacacacaaggtactgtcactatgttttctgatgat |
486 |
Q |
| |
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| T |
34729829 |
tttctcttgaagcctgcaaaagacaacgctaacacacaaggtactgtcactatgttttctgatgat |
34729764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 86 - 485
Target Start/End: Complemental strand, 34726104 - 34725707
Alignment:
| Q |
86 |
tatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattcttgaaaacctgattttgtaataaaacaactttaaattttgctgt |
185 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||||| |||| || ||||||| ||||| ||||| |
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| T |
34726104 |
tatgacgttcctaagccgaagtctttactaactagatttgtatgagtgcgccattcgttaaaacctgatttagtaaaaatacaacttcaaatt--gctgt |
34726007 |
T |
|
| Q |
186 |
tagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgtagttaattgcaagtcattcatttctcaatgattcaaattttact |
285 |
Q |
| |
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||||| |||| |||| || ||||||||||||||| |||| ||| |||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34726006 |
tagtcaaaacttagaccagagaacatccacttttggttgatttataggtttattatagttaattgcaagtcattcatttcacaatgattcaaattttact |
34725907 |
T |
|
| Q |
286 |
gctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaattcaaagactgctacaaatttagcctggcaaa |
385 |
Q |
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| | ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
34725906 |
gttgtcttctatcttctaatatattttggttctgcagatgggaagcaacagatgagtccatttactaattccaagactgctacaaatttagcctggcaaa |
34725807 |
T |
|
| Q |
386 |
acatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaacgctaacacacaaggtactgtcactatgttttctgatga |
485 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||| | |||||||||||||| ||||| |||| |
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| T |
34725806 |
acatgcacaacagcaagctcccccaagcaaaagattttctcttgaagccttcaaaagacaacattgacacaccaagtactgtcactatgctttctcatga |
34725707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 43 - 397
Target Start/End: Complemental strand, 38610732 - 38610387
Alignment:
| Q |
43 |
atgatacaaataatgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattct |
142 |
Q |
| |
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|||||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||||||||| || ||||||||||| || |
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| T |
38610732 |
atgatacaaataattatcatgattgtttggacttgagtgtgattatgatgttcctaagccgaagtctttactaactagatttttacgagtatgccat-ct |
38610634 |
T |
|
| Q |
143 |
tgaaaacctgattttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgta |
242 |
Q |
| |
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| |||||||||||| |||| || ||||||| | |||||| |||||||| ||| |||| ||||||| |||||||||| ||||||||| || || |
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| T |
38610633 |
ttaaaacctgatttagtaaaaatacaacttgacattttgttgttagtcaaaagttagaccaaagaagatccacttttggttgttttg--------ttata |
38610542 |
T |
|
| Q |
243 |
gttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagt |
342 |
Q |
| |
|
||||||||||||||||||||||| | ||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
38610541 |
gttaattgcaagtcattcatttcgcgatgatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaacagatgagt |
38610442 |
T |
|
| Q |
343 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaaca |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
38610441 |
ccatttgctaattcaaagactgctacatatttagcctggcaaaacatgcacaaca |
38610387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 43 - 397
Target Start/End: Complemental strand, 38795517 - 38795172
Alignment:
| Q |
43 |
atgatacaaataatgatcatgattgttcggaattgagtgtgattatgacgtgcctaagctgaagtctttactaactagatttgtatgagtatgccattct |
142 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||||||||| || ||||||||||| || |
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| T |
38795517 |
atgatacaaataattatcatgattgtttggacttgagtgtgattatgatgttcctaagccgaagtctttactaactagatttttacgagtatgccat-ct |
38795419 |
T |
|
| Q |
143 |
tgaaaacctgattttgtaataaaacaactttaaattttgctgttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgta |
242 |
Q |
| |
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| |||||||||||| |||| || ||||||| | |||||| |||||||| ||| |||| ||||||| |||||||||| ||||||||| || || |
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| T |
38795418 |
ttaaaacctgatttagtaaaaatacaacttgacattttgttgttagtcaaaagttagaccaaagaagatccacttttggttgttttg--------ttata |
38795327 |
T |
|
| Q |
243 |
gttaattgcaagtcattcatttctcaatgattcaaattttactgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagt |
342 |
Q |
| |
|
||||||||||||||||||||||| | || || ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
38795326 |
gttaattgcaagtcattcatttcgcgattatgcaaattttactattctcttctgtcttctaatatatttcggttctgcagatggaaagcaacagatgagt |
38795227 |
T |
|
| Q |
343 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaaca |
397 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
38795226 |
ccatttgctaattcaaagactgctacatatttagcctggcaaaacatgcacaaca |
38795172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 185 - 447
Target Start/End: Complemental strand, 34720765 - 34720505
Alignment:
| Q |
185 |
ttagtcgaaacatagatcaaagaacatccacttttagttgttttggaggtttgttgtagttaattgcaagtcattcatttctcaatgattcaaattttac |
284 |
Q |
| |
|
|||||| |||| || | |||||| || ||| ||||||||| ||| | |||| || |||||| || ||| ||||||||||| |||| || || ||||||| |
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|
| T |
34720765 |
ttagtcaaaacttataccaaagagcagccaattttagttgattt--atgtttattatagttacttacaaatcattcatttcacaatcatgcacattttac |
34720668 |
T |
|
| Q |
285 |
tgctctcttctaacttctaatatattttggttccgcagatggaaagcaacagatgagtccatttgctaattcaaagactgctacaaatttagcctggcaa |
384 |
Q |
| |
|
||||||| || ||||||||||| ||| |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||| |||| |
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|
| T |
34720667 |
cgctctctcttatcttctaatatagtttagttctgcagatgggaagcaacagatgaatccatttgcctattcaaagactgctataaatttagccttgcaa |
34720568 |
T |
|
| Q |
385 |
aacatgcagaacagcaagctcccccaagcaaaagattttctcttgaagcctgcaaaagacaac |
447 |
Q |
| |
|
||||| || |||||| || |||||| | ||||||||||| ||||||| |||||||| |||| |
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|
| T |
34720567 |
aacatacaaaacagcgagttcccccgaataaaagattttcccttgaagtatgcaaaagtcaac |
34720505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 38496083 - 38496163
Alignment:
| Q |
343 |
ccatttgctaattcaaagactgctacaaatttagcctggcaaaacatgcagaacagcaagctcccccaagcaaaagatttt |
423 |
Q |
| |
|
||||||||| | |||||| | || |||||||||| |||| | |||||| |||||||||||||||||| | ||||||||| |
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|
| T |
38496083 |
ccatttgcttttccaaagaatacttcaaatttagcatggccagacatgcccaacagcaagctcccccaaaccaaagatttt |
38496163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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