View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18769_low_6 (Length: 481)

Name: NF18769_low_6
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18769_low_6
NF18769_low_6
[»] chr4 (30 HSPs)
chr4 (213-471)||(326968-327220)
chr4 (17-148)||(327284-327410)
chr4 (338-424)||(42540179-42540265)
chr4 (328-425)||(44833913-44834010)
chr4 (317-424)||(23780214-23780321)
chr4 (303-383)||(7672558-7672638)
chr4 (317-425)||(18740124-18740232)
chr4 (317-378)||(43364229-43364290)
chr4 (328-421)||(48141302-48141391)
chr4 (365-422)||(34214453-34214510)
chr4 (344-416)||(14126311-14126383)
chr4 (320-379)||(10381864-10381923)
chr4 (364-424)||(19747569-19747629)
chr4 (364-424)||(19792177-19792237)
chr4 (358-409)||(55149012-55149063)
chr4 (340-413)||(4485251-4485319)
chr4 (342-379)||(10395455-10395492)
chr4 (344-420)||(6147477-6147552)
chr4 (340-424)||(10334109-10334193)
chr4 (366-425)||(49761685-49761744)
chr4 (386-424)||(10395484-10395522)
chr4 (224-282)||(23780405-23780463)
chr4 (340-424)||(23689413-23689497)
chr4 (331-414)||(3257819-3257897)
chr4 (386-425)||(10381833-10381872)
chr4 (338-397)||(19677989-19678048)
chr4 (213-282)||(19677819-19677893)
chr4 (376-426)||(45628547-45628597)
chr4 (342-374)||(20678274-20678306)
chr4 (346-378)||(32896653-32896685)
[»] chr2 (10 HSPs)
chr2 (301-426)||(33382009-33382134)
chr2 (328-424)||(27081057-27081153)
chr2 (338-425)||(14108775-14108862)
chr2 (338-419)||(5722756-5722837)
chr2 (229-282)||(5722933-5722986)
chr2 (213-282)||(33381883-33381947)
chr2 (317-378)||(13783417-13783478)
chr2 (374-428)||(1484124-1484178)
chr2 (213-282)||(27080909-27080983)
chr2 (345-405)||(32971353-32971413)
[»] chr6 (13 HSPs)
chr6 (301-424)||(18271665-18271793)
chr6 (318-413)||(20836610-20836705)
chr6 (304-421)||(33427640-33427757)
chr6 (348-424)||(12127251-12127327)
chr6 (342-427)||(14569912-14569997)
chr6 (309-379)||(9619557-9619627)
chr6 (386-424)||(30369538-30369576)
chr6 (381-424)||(9082156-9082199)
chr6 (235-282)||(20836794-20836841)
chr6 (339-394)||(26403235-26403290)
chr6 (348-426)||(20116408-20116486)
chr6 (343-421)||(12852267-12852345)
chr6 (248-282)||(18271854-18271888)
[»] chr7 (20 HSPs)
chr7 (301-424)||(27305494-27305617)
chr7 (338-421)||(10595922-10596005)
chr7 (317-424)||(19367098-19367200)
chr7 (317-424)||(43341017-43341124)
chr7 (327-425)||(4922692-4922790)
chr7 (338-420)||(23777021-23777103)
chr7 (317-391)||(23803055-23803129)
chr7 (328-424)||(16813809-16813901)
chr7 (340-424)||(31305189-31305273)
chr7 (348-424)||(35912175-35912251)
chr7 (338-387)||(10596089-10596138)
chr7 (213-281)||(4922548-4922611)
chr7 (339-420)||(42731054-42731125)
chr7 (301-424)||(23167911-23168030)
chr7 (240-279)||(10596070-10596109)
chr7 (240-279)||(10596203-10596242)
chr7 (358-421)||(45852502-45852565)
chr7 (342-424)||(43951273-43951355)
chr7 (248-281)||(19367271-19367304)
chr7 (350-411)||(20335639-20335700)
[»] chr3 (17 HSPs)
chr3 (327-426)||(36436036-36436135)
chr3 (317-424)||(55216817-55216919)
chr3 (317-424)||(8473238-8473340)
chr3 (339-398)||(37152706-37152765)
chr3 (316-424)||(25653530-25653639)
chr3 (338-421)||(40654096-40654174)
chr3 (317-383)||(29630149-29630215)
chr3 (301-379)||(33186285-33186367)
chr3 (345-424)||(54801612-54801686)
chr3 (220-282)||(29630049-29630111)
chr3 (349-421)||(29596887-29596959)
chr3 (317-420)||(11750023-11750126)
chr3 (339-424)||(867546-867626)
chr3 (317-424)||(26662040-26662137)
chr3 (248-282)||(33186189-33186223)
chr3 (344-424)||(34607318-34607397)
chr3 (250-282)||(40654233-40654265)
[»] chr1 (16 HSPs)
chr1 (339-426)||(22786645-22786732)
chr1 (345-421)||(34821605-34821680)
chr1 (343-426)||(5993536-5993619)
chr1 (318-400)||(44011747-44011829)
chr1 (338-401)||(32567090-32567153)
chr1 (318-383)||(85712-85777)
chr1 (337-414)||(8812386-8812463)
chr1 (380-424)||(45376421-45376465)
chr1 (331-416)||(42254266-42254346)
chr1 (345-432)||(52247466-52247548)
chr1 (339-413)||(47756453-47756527)
chr1 (344-404)||(28283181-28283241)
chr1 (235-282)||(47930895-47930942)
chr1 (248-282)||(8812528-8812562)
chr1 (348-420)||(15661573-15661640)
chr1 (360-424)||(39549648-39549711)
[»] chr5 (18 HSPs)
chr5 (317-421)||(5131302-5131406)
chr5 (334-424)||(19914351-19914431)
chr5 (338-421)||(22920845-22920923)
chr5 (338-424)||(43259887-43259968)
chr5 (342-401)||(10476566-10476625)
chr5 (338-414)||(27946869-27946945)
chr5 (345-425)||(34071392-34071472)
chr5 (342-419)||(29452330-29452407)
chr5 (338-424)||(5791776-5791862)
chr5 (224-282)||(19914485-19914543)
chr5 (350-424)||(3883734-3883808)
chr5 (338-424)||(43399355-43399436)
chr5 (339-424)||(6644865-6644949)
chr5 (340-401)||(16489133-16489194)
chr5 (337-390)||(27514527-27514580)
chr5 (248-282)||(27514402-27514436)
chr5 (230-276)||(29445253-29445299)
chr5 (380-421)||(11672315-11672356)
[»] chr8 (12 HSPs)
chr8 (317-424)||(30595426-30595523)
chr8 (327-426)||(42651389-42651493)
chr8 (342-424)||(35699690-35699767)
chr8 (339-424)||(3639863-3639943)
chr8 (339-424)||(18605171-18605256)
chr8 (381-425)||(3867680-3867724)
chr8 (348-424)||(11781582-11781658)
chr8 (248-282)||(387723-387757)
chr8 (240-282)||(30595575-30595617)
chr8 (324-425)||(42326690-42326788)
chr8 (344-421)||(2259758-2259830)
chr8 (233-282)||(18605352-18605401)
[»] scaffold0024 (2 HSPs)
scaffold0024 (348-426)||(60031-60104)
scaffold0024 (227-282)||(60182-60232)
[»] scaffold0198 (1 HSPs)
scaffold0198 (370-425)||(10229-10284)
[»] scaffold0086 (1 HSPs)
scaffold0086 (338-379)||(20692-20733)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 213 - 471
Target Start/End: Complemental strand, 327220 - 326968
Alignment:
Q  213 agttcaattcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttgnnnnnnnnnnnnnnnnnncagttcggtttg 312  Q
    |||||| |||||||||||||||      |||||||||||||||| |||||||||||||||||||||||||                  ||||||||||||    
T  327220 agttcagttcaaaacagttcag------acagtttagttcagttttgtaactaaaattcaatttcatttgtttttttcatatttttttcagttcggtttg 327127  T
Q  313 aaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaacca 412  Q
    ||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||    
T  327126 aaacagttcaatttaaaatgcaaacagttcagttcagttattttaaatttagcaaacaattcagtttagttcggttcatttttcatcccgaactcaacca 327027  T
Q  413 tgcccacccctaatcactaccacaaaataatttaaattatggtattaattaggcttcat 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  327026 tgcccacccctaatcactaccacaaaataatttaaattatggtattaattaggcttcat 326968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 327410 - 327284
Alignment:
Q  17 ataagaaagaaatccaaacctctgactcttttatattacatgtaatattctatcaattgagtgatgtttatgtagacaannnnnnnnnnnngttaagata 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||  ||||||             |||||||||    
T  327410 ataagaaagaaatccaaacctctgacccttttatattacatgtaatatcctatcaattgagtgatgtttacatagaca-----ttttttttgttaagata 327316  T
Q  117 caaaggttcgcagagtaatcactaggggtggg 148  Q
    ||||||||||||||||||||||||||||||||    
T  327315 caaaggttcgcagagtaatcactaggggtggg 327284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 42540265 - 42540179
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  42540265 agttcagttcaattattttaaatttagcaaacaattcagttcagttcggttctgttttcatctcgaactgaaccatgcccaccccta 42540179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 328 - 425
Target Start/End: Complemental strand, 44834010 - 44833913
Alignment:
Q  328 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||| |||  ||||||||| |||||||||||||| ||||||| |||||||||||    
T  44834010 aaatacaaacagttcagttcagttattttaaatttagcaaacagttcaatttgattcggttcaattttcatcccgaaccgaaccatacccacccctaa 44833913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 23780321 - 23780214
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || ||||| |||| ||||||||||| |||||||| |||||||||||| || |||| | ||||||||||||||||||||||||||||||||| |    
T  23780321 agttcagttcgaaatacaaacagttcagttcaattattttagatttagcaaacaattaagttcaattcggttcagttttcatcccgaactgaaccatgtc 23780222  T
Q  417 caccccta 424  Q
    ||||||||    
T  23780221 caccccta 23780214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 7672638 - 7672558
Alignment:
Q  303 gttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagtt 383  Q
    ||||||||||||| ||||||||| |||||||||| | || |||||||||||||||||||||||||||||||| ||||||||    
T  7672638 gttcggtttgaaacagttcaattcgaaatgcaaacaatttagttcagttattttaaatttagcaaacagttctgtttagtt 7672558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 425
Target Start/End: Original strand, 18740124 - 18740232
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || |||||||||| | ||||||||  ||||||||||||||||||| |||||| |||  |||||||||||||| ||||| || ||||||||| |    
T  18740124 agttcagttcgaaatgcaaacaattcagttctattattttaaatttagcaaatagttcattttgattcggttcagtttttatcccaaattgaaccatgtc 18740223  T
Q  417 cacccctaa 425  Q
    |||||||||    
T  18740224 cacccctaa 18740232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 43364229 - 43364290
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtt 378  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43364229 agttcgattcgaaatgcaaacagttcagttcagttattttaaatttagcaaacagttcagtt 43364290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 328 - 421
Target Start/End: Original strand, 48141302 - 48141391
Alignment:
Q  328 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||  ||| ||||||||    |||||| ||||| |||||||||||||||    
T  48141302 aaatgcaaacaattcagttcagttattttaaatttagcaaacagttcaccttacttcggttc----ttcatctcgaaccgaaccatgcccaccc 48141391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 422
Target Start/End: Complemental strand, 34214510 - 34214453
Alignment:
Q  365 caaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccc 422  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  34214510 caaacaattcagtttagttcggttcagttttcatcccgaaccaaaccatgcccacccc 34214453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 344 - 416
Target Start/End: Complemental strand, 14126383 - 14126311
Alignment:
Q  344 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||||| ||||||||||||||||||||| ||||  ||||| ||||||||||||| | ||||||||||||||    
T  14126383 gttcagtttttttaaatttagcaaacagttgagttcggttcgattcagttttcatctcaaactgaaccatgcc 14126311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 10381923 - 10381864
Alignment:
Q  320 tcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagttt 379  Q
    |||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  10381923 tcaattcgaaatgcaaccagttcagttcatttattttaaatttagcaaacagttcagttt 10381864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 424
Target Start/End: Original strand, 19747569 - 19747629
Alignment:
Q  364 gcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||||||||||| |||||||| |||||||||||| |  |||||||||||||||||||    
T  19747569 gcaaacagttcagtttggttcggtttagttttcatcccaatttgaaccatgcccaccccta 19747629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 19792237 - 19792177
Alignment:
Q  364 gcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||||||||||| |||||||| |||||||||||| |  |||||||||||||||||||    
T  19792237 gcaaacagttcagtttggttcggtttagttttcatcccaatttgaaccatgcccaccccta 19792177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 409
Target Start/End: Complemental strand, 55149063 - 55149012
Alignment:
Q  358 aatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaa 409  Q
    |||||||||||||||| |||| |||||||||||||||||||||| |||||||    
T  55149063 aatttagcaaacagttaagttcagttcggttcagttttcatcccaaactgaa 55149012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 4485319 - 4485251
Alignment:
Q  340 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccat 413  Q
    |||| |||||||||||||||| ||||||||| |||||||     |||||||||||| |||||||||||||||||    
T  4485319 ttcatttcagttattttaaatctagcaaacaattcagtt-----cggttcagtttttatcccgaactgaaccat 4485251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 379
Target Start/End: Original strand, 10395455 - 10395492
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttcagttt 379  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10395455 cagttcagttattttaaatttagcaaacagttcagttt 10395492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 420
Target Start/End: Original strand, 6147477 - 6147552
Alignment:
Q  344 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 420  Q
    |||||||||||| ||||||| |||| |||||| || |||| ||||| |||||||||||||||  |||||||||||||    
T  6147477 gttcagttattt-aaatttatcaaatagttcaattcagtttggttccgttttcatcccgaaccaaaccatgcccacc 6147552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 10334193 - 10334109
Alignment:
Q  340 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||| ||||||| |||||| |||||| |||||||  ||||  |||||||||||| || ||| ||||||||| ||||||||    
T  10334193 ttcagttcaattattttgaatttaacaaacaattcagttcggttcaattcagttttcattccaaacagaaccatgcacaccccta 10334109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 366 - 425
Target Start/End: Complemental strand, 49761744 - 49761685
Alignment:
Q  366 aaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    |||||||| |||| ||||||||||||||||||| ||||||| |||||| || ||||||||    
T  49761744 aaacagtttagttcagttcggttcagttttcattccgaacttaaccatacctacccctaa 49761685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 424
Target Start/End: Original strand, 10395484 - 10395522
Alignment:
Q  386 gttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10395484 gttcagttttcatcacgaactgaaccatgcccaccccta 10395522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 23780463 - 23780405
Alignment:
Q  224 aaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||||||| ||||| || | ||||||| ||||||| |||||||||||||||||    
T  23780463 aaacagttcagttcagaacaattcaattcagttatgtaactcaaattcaatttcatttg 23780405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 424
Target Start/End: Original strand, 23689413 - 23689497
Alignment:
Q  340 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||| |||| |||||||| |||||||||||| |||| |||  ||| ||| ||||||||||| ||||  || ||||||||||||||    
T  23689413 ttcaattcatttattttagatttagcaaacaattcattttgcttccgtttagttttcatcctgaacccaatcatgcccaccccta 23689497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 414
Target Start/End: Original strand, 3257819 - 3257897
Alignment:
Q  331 tgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 414  Q
    |||||| ||||||||||| ||||| |||||||| ||||||||||||||     || |||| ||||||||||||||  |||||||    
T  3257819 tgcaaacagttcagttcaattattataaatttaccaaacagttcagtt-----cgattcaattttcatcccgaaccaaaccatg 3257897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 425
Target Start/End: Complemental strand, 10381872 - 10381833
Alignment:
Q  386 gttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  10381872 gttcagttttcattccgaactgaaccatgcccacctctaa 10381833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 397
Target Start/End: Original strand, 19677989 - 19678048
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttca 397  Q
    |||||| || ||||||||||||||||||||| | |||||||||||| | |||| ||||||    
T  19677989 agttcattttagttattttaaatttagcaaatatttcagtttagtttgattcacttttca 19678048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 19677819 - 19677893
Alignment:
Q  213 agttcaattcaaaacagttc-----agttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    ||||| ||||||||||||||     |||||||||||||| |||||| ||| ||||||||||||| ||||| ||||    
T  19677819 agttcgattcaaaacagttcggttaagttcggaacagttcagttcaattcggtaactaaaattcgatttcttttg 19677893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 45628597 - 45628547
Alignment:
Q  376 gtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 426  Q
    |||| ||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  45628597 gtttggtttggttcagttctcatcccgaactgaaccatccccacctctaat 45628547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 374
Target Start/End: Complemental strand, 20678306 - 20678274
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttc 374  Q
    ||||||| |||||||||||||||||||||||||    
T  20678306 cagttcaattattttaaatttagcaaacagttc 20678274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 32896653 - 32896685
Alignment:
Q  346 tcagttattttaaatttagcaaacagttcagtt 378  Q
    |||||||| ||||||||||||||||||||||||    
T  32896653 tcagttatcttaaatttagcaaacagttcagtt 32896685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 301 - 426
Target Start/End: Original strand, 33382009 - 33382134
Alignment:
Q  301 cagttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcc 400  Q
    ||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  33382009 cagttcggtttgaaacagttcaattcgaaatgcaaacagttaagttcagttattttaaagttagcaaacaattcagttcagttcggttcagtttttatcc 33382108  T
Q  401 cgaactgaaccatgcccacccctaat 426  Q
    |||| |||||||||||||||||||||    
T  33382109 cgaattgaaccatgcccacccctaat 33382134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 27081057 - 27081153
Alignment:
Q  328 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||    
T  27081057 aaatgcaaacagttcaattcagttattttaaatttagcaaacagttcagttcagttcggttcagttttcattccgaactgaaccgtgcccaccccta 27081153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 425
Target Start/End: Original strand, 14108775 - 14108862
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    |||||| |||| ||||||||||||||  ||||||||||||| ||||||||||||||||||||  |||||||||||||  |||||||||    
T  14108775 agttcaattcaattattttaaatttaataaacagttcagttcagttcggttcagttttcatcttgaactgaaccatgttcacccctaa 14108862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 419
Target Start/End: Complemental strand, 5722837 - 5722756
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccac 419  Q
    |||||| |||||||||||||||||||||||| | |||| ||| |||||||||| |||||||||| ||| |||||||| ||||    
T  5722837 agttcaattcagttattttaaatttagcaaataattcaatttggttcggttcacttttcatcccaaaccgaaccatgtccac 5722756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Complemental strand, 5722986 - 5722933
Alignment:
Q  229 gttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||| ||||    
T  5722986 gttcagttcggaacagttcagttcagttcggtaactaaaattcaatttcgtttg 5722933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 33381883 - 33381947
Alignment:
Q  213 agttcaattcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||| |||||||||||||||||||     |||||||||| ||||||||||||||||||||||||    
T  33381883 agttcaattcgaaacagttcagttcggaac-----agttcagttcggtaactaaaattcaatttcatttg 33381947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 378
Target Start/End: Original strand, 13783417 - 13783478
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtt 378  Q
    |||||||||| ||||||||| | ||||||| |||||||||||||||| |||||| |||||||    
T  13783417 agttcaatttaaaatgcaaacaattcagtttagttattttaaatttaacaaacaattcagtt 13783478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 428
Target Start/End: Original strand, 1484124 - 1484178
Alignment:
Q  374 cagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaatca 428  Q
    |||| ||||| ||||||||||||||||||||| ||||||||| ||| ||||||||    
T  1484124 cagtctagtttggttcagttttcatcccgaaccgaaccatgctcactcctaatca 1484178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 27080909 - 27080983
Alignment:
Q  213 agttcaattcaaaacagttcagttcgg-----aacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||| |||||||||||||||||||      ||||||| |||||||||  ||||||||||||||||||||||||    
T  27080909 agttcagttcaaaacagttcagttcgattcgaaacagttcagttcagtttggtaactaaaattcaatttcatttg 27080983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 32971353 - 32971413
Alignment:
Q  345 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaac 405  Q
    |||| |||||||||||||| ||||||| |||||| |  || ||| ||||||||||||||||    
T  32971353 ttcaattattttaaatttaccaaacagctcagttcaactcagtttagttttcatcccgaac 32971413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 18271793 - 18271665
Alignment:
Q  301 cagttcggtttgaaatagttca-----atttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagtttt 395  Q
    ||||||||||||||| ||||||      ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  18271793 cagttcggtttgaaacagttcagtttggtttgaaatgcaaacagttcagttcagttattttaaatttagcacacagttcagttcagttcggttcagtttt 18271694  T
Q  396 catcccgaactgaaccatgcccaccccta 424  Q
    ||||| |||||||||||||||||||||||    
T  18271693 catccagaactgaaccatgcccaccccta 18271665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 20836705 - 20836610
Alignment:
Q  318 gttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccat 413  Q
    ||||| || |||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  20836705 gttcagttcgaaatgcaaacagttcagttcagttattttagatttagcaaacagtttagttcagttcggttcagttttcatcccgaactgaaccat 20836610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 304 - 421
Target Start/End: Complemental strand, 33427757 - 33427640
Alignment:
Q  304 ttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccga 403  Q
    |||| ||||||| |||||| ||  ||||||||| |||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||    
T  33427757 ttcgatttgaaacagttcagttcaaaatgcaaacagttcaattcagttattttaaatttaacaaataattcagtttagttcggttcagttttcattccga 33427658  T
Q  404 actgaaccatgcccaccc 421  Q
    ||||||| ||| ||||||    
T  33427657 actgaacaatgtccaccc 33427640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 12127327 - 12127251
Alignment:
Q  348 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||| ||||||||||    
T  12127327 agttattttgaatttcgcaaacagttcagtttagttcggttaagttttcatcccgaaccaaaccatacccaccccta 12127251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 427
Target Start/End: Original strand, 14569912 - 14569997
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaatc 427  Q
    |||||||||||||||||| |||  |||||||| |||||| || | |||||||||||||| ||| |||||||||| || ||||||||    
T  14569912 cagttcagttattttaaacttaataaacagtttagtttaatttgattcagttttcatcctgaattgaaccatgcacatccctaatc 14569997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 379
Target Start/End: Original strand, 9619557 - 9619627
Alignment:
Q  309 tttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagttt 379  Q
    ||||||| |||||| ||  ||||||||| ||||| |||||||||||||||||||  |||||||||||||||    
T  9619557 tttgaaacagttcagttcaaaatgcaaacagttcggttcagttattttaaatttgacaaacagttcagttt 9619627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 386 - 424
Target Start/End: Complemental strand, 30369576 - 30369538
Alignment:
Q  386 gttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30369576 gttcagttttcatcccgaactgaaccatgcccaccccta 30369538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 9082156 - 9082199
Alignment:
Q  381 gttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||| |||||||||||||||| ||||||||||||||||||    
T  9082156 gttcggtttagttttcatcccgaaccgaaccatgcccaccccta 9082199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 20836841 - 20836794
Alignment:
Q  235 ttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||    
T  20836841 ttcgaaacagttcagttcagttcggtaactaaaattcaatttcatttg 20836794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 26403290 - 26403235
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttt 394  Q
    ||||| ||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  26403290 gttcaattcagttattttaaatttatcaaacagtccagttcagttcggttcggttt 26403235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 20116408 - 20116486
Alignment:
Q  348 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 426  Q
    |||||||||||||| | ||||||||| ||||| ||| | |||| |||||||||||||  || ||||| |||||||||||    
T  20116408 agttattttaaattaaacaaacagtttagtttggttagtttcaattttcatcccgaatcgatccatgtccacccctaat 20116486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 12852267 - 12852345
Alignment:
Q  343 agttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    |||| |||| ||||||||||| |||||| || || |  ||||||||||||||||||||| ||| |||| ||| ||||||    
T  12852267 agtttagttgttttaaatttaacaaacaatttagatcggttcggttcagttttcatcccaaaccgaacaatgtccaccc 12852345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 18271888 - 18271854
Alignment:
Q  248 agttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||| ||||||||||||||||||||||||    
T  18271888 agttcagttcagtaactaaaattcaatttcatttg 18271854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 424
Target Start/End: Complemental strand, 27305617 - 27305494
Alignment:
Q  301 cagttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcc 400  Q
    ||||||||||||||| |||||||||  |||||| || ||||||||| ||||||||||||||||||||||| | ||||||  |||||||||||||||||||    
T  27305617 cagttcggtttgaaacagttcaattcaaaatgctaacagttcagtttagttattttaaatttagcaaacaatgcagtttgattcggttcagttttcatcc 27305518  T
Q  401 cgaactgaaccatgcccaccccta 424  Q
     |||| |||||||| |||||||||    
T  27305517 tgaaccgaaccatggccaccccta 27305494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 10596005 - 10595922
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||||||    
T  10596005 agttcagttcagttattttaaatttagcaaacagttcagttcagttcggtttagttttcatcccaaactgaaccatgtccaccc 10595922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 19367200 - 19367098
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||     || ||||||||||||||||||||||||||||||    
T  19367200 agttcagttcgaaatacaaacagttcagttcagttattttaaatttagcaaacagttcagtt-----cgattcagttttcatcccgaactgaaccatgcc 19367106  T
Q  417 caccccta 424  Q
    ||||||||    
T  19367105 caccccta 19367098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 43341124 - 43341017
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || ||||||||||  ||| ||||||||||||||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||| ||    
T  43341124 agttcagttcgaaatgcaaacggtttagttcagttattttaaatttatcaaacaattcagtttaatttggttcagttttcatcccgaactgaaccattcc 43341025  T
Q  417 caccccta 424  Q
    || |||||    
T  43341024 catcccta 43341017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 4922692 - 4922790
Alignment:
Q  327 gaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    |||||| |||||||| |||||||||||||||||||||||||||| ||||||| |||| || |||||||| ||||| |||||||||||| ||||||||||    
T  4922692 gaaatgtaaatagtttagttcagttattttaaatttagcaaacaattcagttcagtttggatcagtttttatcccaaactgaaccatgtccacccctaa 4922790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 338 - 420
Target Start/End: Complemental strand, 23777103 - 23777021
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 420  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |  ||||||||||||||||||||    
T  23777103 agttcagttcaattattttaaatttagcaaacagttcagtttagttcgattcagttttcgtttcgaactgaaccatgcccacc 23777021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 23803129 - 23803055
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcag 391  Q
    ||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||||    
T  23803129 agttcaattcgaaatgtaaacagttcagttcaattattttaaatttagcaaacaattcagtttggttcggttcag 23803055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 424
Target Start/End: Original strand, 16813809 - 16813901
Alignment:
Q  328 aaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcag-ttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||     |||||||||||| |||||||||||||||||| |||  |||||||||    
T  16813809 aaatgcaaacagttctgttcagttattttaaatttagcaaacagttc-----agttcggttcagtttttcatcccgaactgaatcatatccaccccta 16813901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 340 - 424
Target Start/End: Complemental strand, 31305273 - 31305189
Alignment:
Q  340 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||| ||||||||||||||| |||||||||| ||  |||||||||| ||||||||||||||  |||||| ||||||||||    
T  31305273 ttcagttcaattattttaaatttagtaaacagttcacttctgttcggttcatttttcatcccgaaccaaaccatacccaccccta 31305189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 348 - 424
Target Start/End: Original strand, 35912175 - 35912251
Alignment:
Q  348 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||||||||||  ||||| |||||||| |||||||| |||||||||  ||||||||||||||||||||||||    
T  35912175 agttattttaaatttaaaaaacaattcagtttggttcggtttagttttcatttcgaactgaaccatgcccaccccta 35912251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 387
Target Start/End: Complemental strand, 10596138 - 10596089
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggt 387  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10596138 agttcagttcagttattttaaatttagcaaacagttcagttcagttcggt 10596089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 4922548 - 4922611
Alignment:
Q  213 agttcaattcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcattt 281  Q
    |||||||||||||||||||||||||| ||      |||||||||| |||||||||||||||||||||||    
T  4922548 agttcaattcaaaacagttcagttcgaaa-----aagttcagttcggtaactaaaattcaatttcattt 4922611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 420
Target Start/End: Complemental strand, 42731125 - 42731054
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 420  Q
    |||||||| |||| ||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||||||    
T  42731125 gttcagttgagttcttttaaatttagcaaacagttcagtt----------cagttttcatcccgaactgaaccatacccacc 42731054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 424
Target Start/End: Original strand, 23167911 - 23168030
Alignment:
Q  301 cagttcggtttgaaatagttcaatttgaaatgcaaatagttcagttcagttattttaaattt-agcaaacagttcagtttagttcggttcagttttcatc 399  Q
    |||||||||||| |  ||||||  | |||||||||| ||| | ||| |||||||||| |||| |||||||| ||||| |     ||||||||||||||||    
T  23167911 cagttcggtttggaccagttcagatcgaaatgcaaacagtgccgtttagttattttagattttagcaaacaattcaggt-----cggttcagttttcatc 23168005  T
Q  400 ccgaactgaaccatgcccaccccta 424  Q
      || ||||||||||||||||||||    
T  23168006 ttgagctgaaccatgcccaccccta 23168030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 10596109 - 10596070
Alignment:
Q  240 aacagtttagttcagttctgtaactaaaattcaatttcat 279  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  10596109 aacagttcagttcagttcggtaactaaaattcaatttcat 10596070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 10596242 - 10596203
Alignment:
Q  240 aacagtttagttcagttctgtaactaaaattcaatttcat 279  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  10596242 aacagttcagttcagttcggtaactaaaattcaatttcat 10596203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 45852502 - 45852565
Alignment:
Q  358 aatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    ||||||||||||| || |||||| |||| |||| ||||||||||||||  |||||| |||||||    
T  45852502 aatttagcaaacaatttagtttaattcgattcaattttcatcccgaaccaaaccatacccaccc 45852565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 424
Target Start/End: Complemental strand, 43951355 - 43951273
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||| ||||||||||||||||||||| || |||| ||||   |||| |||||| ||| || |||| |||| |||||||||    
T  43951355 cagttcaattattttaaatttagcaaacaatttagttcagtttaattcaattttcaccccaaattgaatcatgtccaccccta 43951273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 19367304 - 19367271
Alignment:
Q  248 agttcagttctgtaactaaaattcaatttcattt 281  Q
    |||||||||| |||||||||||||||||||||||    
T  19367304 agttcagttcggtaactaaaattcaatttcattt 19367271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 411
Target Start/End: Complemental strand, 20335700 - 20335639
Alignment:
Q  350 ttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaacc 411  Q
    |||||||||||||| ||||||||||| |   ||||  ||||||||||||||| |||||||||    
T  20335700 ttattttaaatttatcaaacagttcaatacggttcaattcagttttcatcccaaactgaacc 20335639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 36436135 - 36436036
Alignment:
Q  327 gaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 426  Q
    |||||| ||| |||||| || |||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  36436135 gaaatggaaacagttcaatttagttattttaaatttagcaaacagttcaatttggttcggttctgttttcatcccgaactgaaccatgcccatccctaat 36436036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 55216817 - 55216919
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || |||||||||| |||||||||||||||||||||||||| |||| |||||     ||||| |||||||||||||||| || |||||||||||    
T  55216817 agttcagttcgaaatgcaaacagttcagttcagttattttaaatttaacaaatagttc-----agttcagttcagttttcatccctaattgaaccatgcc 55216911  T
Q  417 caccccta 424  Q
    ||||||||    
T  55216912 caccccta 55216919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 8473238 - 8473340
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||||||  ||||||||| ||||||||||||||| |||| ||||||||||||||||||||     || |||||||||||||| |||||||||||||      
T  8473238 agttcaattcaaaatgcaaagagttcagttcagttagtttagatttagcaaacagttcagtt-----cgattcagttttcatcctgaactgaaccatgtt 8473332  T
Q  417 caccccta 424  Q
    ||||||||    
T  8473333 caccccta 8473340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 398
Target Start/End: Original strand, 37152706 - 37152765
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcat 398  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  37152706 gttcagttcagttattttaaatttagcaaacagttcaatttagttcggttcaattttcat 37152765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 316 - 424
Target Start/End: Original strand, 25653530 - 25653639
Alignment:
Q  316 tagttcaatttgaaatgcaaatagttcagttcagttatttt-aaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 414  Q
    ||||||| ||| ||||||||| ||| |  |||||||||||| ||||||| ||||||||| ||||   |||||||||||||||||||||||| || |||||    
T  25653530 tagttcagtttaaaatgcaaacagtacgattcagttatttttaaatttatcaaacagtttagttcgattcggttcagttttcatcccgaaccgagccatg 25653629  T
Q  415 cccaccccta 424  Q
    ||||||||||    
T  25653630 cccaccccta 25653639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 40654174 - 40654096
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    |||||||||||||||||||||||||| ||||||||||     |||||||| ||||||| |||||||||||||||||| ||||||    
T  40654174 agttcagttcagttattttaaatttaacaaacagttc-----agttcggtacagtttttatcccgaactgaaccatgaccaccc 40654096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 29630149 - 29630215
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagtt 383  Q
    |||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||    
T  29630149 agttcagttcgaaatgcaaacagttcagttcagttatttcaaatttagcaaacagttcagttcagtt 29630215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 33186285 - 33186367
Alignment:
Q  301 cagttcggtttgaaatagttcaatt-----tgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagttt 379  Q
    ||||||||||||||| |||||||||     ||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  33186285 cagttcggtttgaaacagttcaattcagtttgaaatgcaac-agttcagttcagttattttaaatttaacaaacagttcagttt 33186367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 345 - 424
Target Start/End: Complemental strand, 54801686 - 54801612
Alignment:
Q  345 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||| ||||||||||||||||||||||||     || |||||||||||||||||||| |||||||||||| |||||||||    
T  54801686 ttcaattattttaaatttagcaaacagtt-----taattcggttcagttttcatcccaaactgaaccatgtccaccccta 54801612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 29630049 - 29630111
Alignment:
Q  220 ttcaaaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||||||||||| ||| |||| |||||||||| | ||||||||||||||||||||||    
T  29630049 ttcaaaacagttcagttcagaatagttcagttcagttcgggaactaaaattcaatttcatttg 29630111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 349 - 421
Target Start/End: Complemental strand, 29596959 - 29596887
Alignment:
Q  349 gttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    |||||||| ||||||| |||||||||||||| ||||||||||||||||||  | |||  ||||||||||||||    
T  29596959 gttattttgaatttagtaaacagttcagtttggttcggttcagttttcatttcaaaccaaaccatgcccaccc 29596887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 317 - 420
Target Start/End: Original strand, 11750023 - 11750126
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    ||||||||| ||||||||||| |||  | |||||||||||||||||| ||||||||||||||    ||| || ||||||| |||||| || |||||| ||    
T  11750023 agttcaattcgaaatgcaaatggttatgatcagttattttaaatttatcaaacagttcagttcgagtcgatttagttttcgtcccgatctaaaccatacc 11750122  T
Q  417 cacc 420  Q
    ||||    
T  11750123 cacc 11750126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 867546 - 867626
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||||||||||||||||||| |||||||||| ||||     |||||| ||||||||| ||||  ||| |||||||||||||    
T  867546 gttcagttcagttattttaaatttaccaaacagttcggttt-----ggttcaattttcatccggaaccaaactatgcccaccccta 867626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 424
Target Start/End: Original strand, 26662040 - 26662137
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || |||||||||| ||||||||| |||||||||||||||||||| |          | || ||||||||||||||||| ||||||||||||||    
T  26662040 agttcagttcgaaatgcaaacagttcagtttagttattttaaatttagcaagc----------aatttggttcagttttcatcccaaactgaaccatgcc 26662129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 33186189 - 33186223
Alignment:
Q  248 agttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||| ||||||||||||||||||||||||    
T  33186189 agttcagttcggtaactaaaattcaatttcatttg 33186223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 34607397 - 34607318
Alignment:
Q  344 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||| |||| ||||||||||||| || ||||| |||||| ||| |||||||| || ||| ||| ||| |||||||||    
T  34607397 gttcagtttttttgaatttagcaaacaatttagtttggttcgg-tcaattttcatctcggactaaacaatgtccaccccta 34607318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 40654265 - 40654233
Alignment:
Q  250 ttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||| ||||||||||||||||||||||||    
T  40654265 ttcagttcggtaactaaaattcaatttcatttg 40654233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 22786645 - 22786732
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 426  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  22786645 gttcagttcaattattttaaatttagcaaacagttcagttcggttcggttcagttttcatcccgaaccgaaccatgcacacccctaat 22786732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 34821680 - 34821605
Alignment:
Q  345 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| || || |||||||||||||||    
T  34821680 ttcagttattttaaatttagcaaacagttcagttcggtttggttcagttttcatctcg-accgaaccatgcccaccc 34821605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 426
Target Start/End: Complemental strand, 5993619 - 5993536
Alignment:
Q  343 agttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 426  Q
    |||||| |||||||||||||||| |||| |||| |||||||||||||| |||||||| | ||| |||||||| |||||||||||    
T  5993619 agttcaattattttaaatttagcgaacaattcaatttagttcggttcaattttcatctcaaaccgaaccatgtccacccctaat 5993536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 318 - 400
Target Start/End: Complemental strand, 44011829 - 44011747
Alignment:
Q  318 gttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcc 400  Q
    ||||| || |||||||||| |||||||||||||||| ||||||||| ||||||||||||||  ||||| ||||||||| ||||    
T  44011829 gttcagttcgaaatgcaaacagttcagttcagttatattaaatttatcaaacagttcagttcggttcgattcagttttaatcc 44011747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 32567153 - 32567090
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatccc 401  Q
    ||||| |||||||||||||||||| |  ||||| ||||||||||||||||||||||||||||||    
T  32567153 agttcggttcagttattttaaattcaataaacaattcagtttagttcggttcagttttcatccc 32567090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 383
Target Start/End: Complemental strand, 85777 - 85712
Alignment:
Q  318 gttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagtt 383  Q
    ||||| || |||||||||||| |||| |||| ||||||||||||||||||||||||||||| ||||    
T  85777 gttcagttcgaaatgcaaatatttcaattcaattattttaaatttagcaaacagttcagttcagtt 85712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 414
Target Start/End: Complemental strand, 8812463 - 8812386
Alignment:
Q  337 tagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 414  Q
    ||||||| |||||||||||||||||||  ||| |||||||||| ||| |||| ||||||||| |||| ||||||||||    
T  8812463 tagttcaattcagttattttaaatttaataaatagttcagttttgtttggtttagttttcattccgatctgaaccatg 8812386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 380 - 424
Target Start/End: Complemental strand, 45376465 - 45376421
Alignment:
Q  380 agttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  45376465 agttcagttcagttttcatcccgaactgaaccatgcccaccccta 45376421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 42254346 - 42254266
Alignment:
Q  331 tgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||     ||||||||| |||||||||| | ||||||||||||||    
T  42254346 tgcaaatagtttagttcagttattttaaatttaataaacagctc-----agttcggtttagttttcatcacaaactgaaccatgcc 42254266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 432
Target Start/End: Original strand, 52247466 - 52247548
Alignment:
Q  345 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaatcactac 432  Q
    |||| |||||||||||||| ||||||||||||||     ||||||| ||||||||  |||| ||||||||||||  ||||||||||||    
T  52247466 ttcaattattttaaatttaacaaacagttcagtt-----cggttcacttttcatcatgaaccgaaccatgcccattcctaatcactac 52247548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 47756453 - 47756527
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccat 413  Q
    |||||||| |||| ||||| ||||| |||  ||||||||| ||||||||||| |||||||||| ||| |||||||    
T  47756453 gttcagtttagttgttttacatttaacaagtagttcagttcagttcggttcaattttcatcccaaaccgaaccat 47756527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 344 - 404
Target Start/End: Complemental strand, 28283241 - 28283181
Alignment:
Q  344 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaa 404  Q
    ||||||||||||| ||||||| ||||| | |||||||  ||| ||||||||||||||||||    
T  28283241 gttcagttattttgaatttagtaaacaatccagtttaactcgattcagttttcatcccgaa 28283181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 47930942 - 47930895
Alignment:
Q  235 ttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||||  |||||||||| ||||||||||||||||||| ||||    
T  47930942 ttcggaacagtccagttcagttcggtaactaaaattcaatttcgtttg 47930895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 8812562 - 8812528
Alignment:
Q  248 agttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||| ||||||||||||||||||||||||    
T  8812562 agttcagttcggtaactaaaattcaatttcatttg 8812528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 348 - 420
Target Start/End: Complemental strand, 15661640 - 15661573
Alignment:
Q  348 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacc 420  Q
    |||||||||||||||||||||      ||||||||||||||||| |||||| | |||| ||||||| ||||||    
T  15661640 agttattttaaatttagcaaa-----tagtttagttcggttcagatttcattctgaaccgaaccatacccacc 15661573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 39549711 - 39549648
Alignment:
Q  360 tttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||||| |||||||| ||| ||||||||| |||| |||||  |||||||| |||||||||    
T  39549711 tttagcaaacaattcagtttggtttggttcagttatcat-ccgaatcgaaccatgtccaccccta 39549648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 317 - 421
Target Start/End: Original strand, 5131302 - 5131406
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    |||||| || |||||| ||| ||||||||||  ||||||||||||||||||| |||| |||| |||||||||||||||||||||| ||||||||||| ||    
T  5131302 agttcagttcgaaatgtaaacagttcagttctattattttaaatttagcaaatagtttagttcagttcggttcagttttcatcccaaactgaaccatacc 5131401  T
Q  417 caccc 421  Q
    |||||    
T  5131402 caccc 5131406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 19914431 - 19914351
Alignment:
Q  334 aaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  19914431 aaatagttcagttcagttattttaaatttagcaaacagttca----------gttcagttttcatcccgaactgaaccatgcccaccccta 19914351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 22920923 - 22920845
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    ||||||||||||||||||||||||||||||| ||||||||||     ||||||||||||||||||||||||| |||||||||||    
T  22920923 agttcagttcagttattttaaatttagcaaatagttcagttt-----ggttcagttttcatcccgaactgaatcatgcccaccc 22920845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 424
Target Start/End: Original strand, 43259887 - 43259968
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||||||||||||||||||||| ||||||||||||||     || |||||||||||||| ||||||||||||| |||||||||    
T  43259887 agttcagttcagttattttaaatttaacaaacagttcagtt-----cgattcagttttcatcctgaactgaaccatgtccaccccta 43259968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 10476566 - 10476625
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatccc 401  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||    
T  10476566 cagttcagttattttaaatttaacaaacagttcagttttgttcggttcaattttcatccc 10476625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 414
Target Start/End: Complemental strand, 27946945 - 27946869
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatg 414  Q
    ||||||||| |||||||||||||||| |||||| ||||||||  |||||| || |||||||||| ||||||||||||    
T  27946945 agttcagtttagttattttaaatttaacaaacaattcagtttgattcggtacatttttcatcccaaactgaaccatg 27946869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 34071392 - 34071472
Alignment:
Q  345 ttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    ||||||||||||||||||| |||||| ||||||||  || |||| |||||||| ||||||| |||||||| ||||||||||    
T  34071392 ttcagttattttaaatttatcaaacaattcagtttgatttggtttagttttcaacccgaaccgaaccatgtccacccctaa 34071472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 419
Target Start/End: Original strand, 29452330 - 29452407
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccac 419  Q
    |||||||||||||||||||||| |||||| |||| ||||||| | || | |||||||||| |||| ||||||||||||    
T  29452330 cagttcagttattttaaatttaacaaacatttcaatttagtttgatttaattttcatcccaaactaaaccatgcccac 29452407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 5791862 - 5791776
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||| || |||||||||||||||| ||||||||||||||||| | ||||  ||||||||||  || ||||||||  |||||||||    
T  5791862 agttcacttaagttattttaaatttaacaaacagttcagtttagattggtttggttttcatcctaaagtgaaccatatccaccccta 5791776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 19914543 - 19914485
Alignment:
Q  224 aaacagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    ||||||||||||||| || |||| |||| ||||| ||||||||||||||||||||||||    
T  19914543 aaacagttcagttcgaaagagttcagtttagttcggtaactaaaattcaatttcatttg 19914485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 3883808 - 3883734
Alignment:
Q  350 ttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||| ||||||||||||| ||||||||||   |||||| |||||||| |||||  |||||| ||||||||||    
T  3883808 ttattttgaatttagcaaacaattcagtttagacaggttcaattttcatctcgaaccaaaccatacccaccccta 3883734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 424
Target Start/End: Complemental strand, 43399436 - 43399355
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||| |||||||||||||||||||||||||     || ||| ||||||| ||||||||||| | |||||||||||| ||| |||||    
T  43399436 agttcggttcagttattttaaatttagcaaa-----caatttggttcggtccagttttcatctcaaactgaaccatgtccatcccta 43399355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 6644865 - 6644949
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||| |||||||||||||||||||||||||| || ||||| | || |||| |||||||| |||||  ||| ||||| ||||||||    
T  6644865 gttcaattcagttattttaaatttagcaaacaatttagttt-ggtcagttctgttttcattccgaatcgaatcatgcacaccccta 6644949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 340 - 401
Target Start/End: Complemental strand, 16489194 - 16489133
Alignment:
Q  340 ttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatccc 401  Q
    ||||||||| ||||||||||||||  ||| | |||||||  |||||||||||||||||||||    
T  16489194 ttcagttcaattattttaaatttaataaataattcagttcggttcggttcagttttcatccc 16489133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 390
Target Start/End: Original strand, 27514527 - 27514580
Alignment:
Q  337 tagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttca 390  Q
    |||||||||||| |||||| ||||||| |||||||||||||| | |||||||||    
T  27514527 tagttcagttcaattatttaaaatttaacaaacagttcagttcaattcggttca 27514580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 282
Target Start/End: Original strand, 27514402 - 27514436
Alignment:
Q  248 agttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||| ||||||||||||||||||||||||    
T  27514402 agttcagttcggtaactaaaattcaatttcatttg 27514436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 29445299 - 29445253
Alignment:
Q  230 ttcagttcggaacagtttagttcagttctgtaactaaaattcaattt 276  Q
    |||||||||||||||||  | ||||||| ||||||||||||||||||    
T  29445299 ttcagttcggaacagttcggctcagttcagtaactaaaattcaattt 29445253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 11672315 - 11672356
Alignment:
Q  380 agttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    |||||| ||||||||||||||||||| |||||||||| ||||    
T  11672315 agttcgattcagttttcatcccgaaccgaaccatgccaaccc 11672356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 317 - 424
Target Start/End: Complemental strand, 30595523 - 30595426
Alignment:
Q  317 agttcaatttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcc 416  Q
    ||||||||| |||||||||| | |||||||| |||||||||||||||||||||| ||||          ||||| |||||||||||||||||||||||||    
T  30595523 agttcaattcgaaatgcaaacaattcagttcggttattttaaatttagcaaacaattca----------gttcaattttcatcccgaactgaaccatgcc 30595434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 327 - 426
Target Start/End: Original strand, 42651389 - 42651493
Alignment:
Q  327 gaaatgcaaatagttcagttc-----agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    |||||||||||||||||||||     |||||||||||| ||||||||||| | | ||| |||||||||| |||| ||||| ||| |||||||||||||||    
T  42651389 gaaatgcaaatagttcagttcggtttagttattttaaaattagcaaacagattaatttggttcggttcaattttgatcccaaaccgaaccatgcccaccc 42651488  T
Q  422 ctaat 426  Q
    |||||    
T  42651489 ctaat 42651493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 424
Target Start/End: Original strand, 35699690 - 35699767
Alignment:
Q  342 cagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||| |||||||||||||| |||||| |||||||     |||||||||||||||||||||| ||||||||||||||||||    
T  35699690 cagttcaattattttaaatttatcaaacaattcagtt-----cggttcagttttcatcccgaaccgaaccatgcccaccccta 35699767  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 424
Target Start/End: Original strand, 3639863 - 3639943
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||| |||||||||||||||||||| |||||| |||||||     ||||||||||||||||| ||| ||||||||||||| |||||    
T  3639863 gttcggttcagttattttaaatttaacaaacatttcagtt-----cggttcagttttcatcctgaaatgaaccatgcccatcccta 3639943  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 339 - 424
Target Start/End: Complemental strand, 18605256 - 18605171
Alignment:
Q  339 gttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    |||||||| | ||||||||||||||||||| |||| |||||||||||||  | |||| ||||||||  |||||| |||||||||||    
T  18605256 gttcagtttaattattttaaatttagcaaagagtttagtttagttcggtctaatttttatcccgaatcgaaccaagcccaccccta 18605171  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 425
Target Start/End: Original strand, 3867680 - 3867724
Alignment:
Q  381 gttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    |||| |||||||||||||||||||| |||||||||||||||||||    
T  3867680 gttcagttcagttttcatcccgaaccgaaccatgcccacccctaa 3867724  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 11781658 - 11781582
Alignment:
Q  348 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccccta 424  Q
    ||||||||| |||||| ||||| |||| |||  |||| |||||||||||||||| |||  ||| |||||||||||||    
T  11781658 agttattttgaatttaacaaacggttcggttcggttcagttcagttttcatcccaaaccaaactatgcccaccccta 11781582  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 387757 - 387723
Alignment:
Q  248 agttcagttctgtaactaaaattcaatttcatttg 282  Q
    ||||||||| |||||||||||||||||||||||||    
T  387757 agttcagttttgtaactaaaattcaatttcatttg 387723  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 30595617 - 30595575
Alignment:
Q  240 aacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    ||||||| |||||| ||| ||||||||||||||||||||||||    
T  30595617 aacagttcagttcaattcggtaactaaaattcaatttcatttg 30595575  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 42326788 - 42326690
Alignment:
Q  324 tttgaaatgcaaatagttcagttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccct 423  Q
    |||||||||||||||||||| ||   ||| ||||||||||||||||| ||  ||| |||||  ||| |||||||||| || | ||||||| |||||||||    
T  42326788 tttgaaatgcaaatagttcattt--atta-tttaaatttagcaaacaattatgttaagttcaattctgttttcatccggagccgaaccatacccacccct 42326692  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 2259830 - 2259758
Alignment:
Q  344 gttcagttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccaccc 421  Q
    ||||| |||||||||||||| |||||| |||||||     ||||||||||||||||  |||| ||||||| |||||||    
T  2259830 gttcaattattttaaatttaacaaacaattcagtt-----cggttcagttttcatcttgaaccgaaccatacccaccc 2259758  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 18605401 - 18605352
Alignment:
Q  233 agttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    |||||||||||||| |||||||||  ||||||||||||| ||||| ||||    
T  18605401 agttcggaacagttcagttcagtttggtaactaaaattctatttcgtttg 18605352  T

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Target: scaffold0024 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 348 - 426
Target Start/End: Complemental strand, 60104 - 60031
Alignment:
Q  348 agttattttaaatttagcaaacagttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaat 426  Q
    |||||||||||||||| ||||||||||||||     || |||||||||||||||||||||||||||| |||||||||||    
T  60104 agttattttaaatttaacaaacagttcagtt-----cgattcagttttcatcccgaactgaaccatgtccacccctaat 60031  T

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Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 60232 - 60182
Alignment:
Q  227 cagttcagttcggaacagtttagttcagttctgtaactaaaattcaatttcatttg 282  Q
    ||||||||||||||||||||     ||||||||||||||||||||||||| |||||    
T  60232 cagttcagttcggaacagtt-----cagttctgtaactaaaattcaatttaatttg 60182  T

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Target: scaffold0198 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 425
Target Start/End: Original strand, 10229 - 10284
Alignment:
Q  370 agttcagtttagttcggttcagttttcatcccgaactgaaccatgcccacccctaa 425  Q
    |||||||||| ||| |||||||||||||||  |||| |||||||||||||||||||    
T  10229 agttcagtttggtttggttcagttttcatctggaacggaaccatgcccacccctaa 10284  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 20692 - 20733
Alignment:
Q  338 agttcagttcagttattttaaatttagcaaacagttcagttt 379  Q
    ||||||||| | ||||||||||||||||||||| ||||||||    
T  20692 agttcagttaatttattttaaatttagcaaacatttcagttt 20733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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