View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_7 (Length: 480)
Name: NF18769_low_7
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 2258368 - 2258001
Alignment:
| Q |
19 |
caaccctctcacaaggtcaacaaaagtcaacacattcacaccaagcaaaaagagattttcaagtcttgttgtcaaagctgaactcaacccttcacttgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2258368 |
caaccctctcacaaggtcaacaaaagtcaacacattcacaccaagcaaaaagagattttcaagtcttgttgtcaaagctgaactcaacccttcacttgtg |
2258269 |
T |
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| Q |
119 |
ataagcttaagcactggtctttcattgtttttaggaaggtttgtgtttttcaacttccaaagagaaaatatagccaaacaaggtttacctgaacaaaatg |
218 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
2258268 |
ataagcttaagcactggtctttcattgttttaggaaaggtttgtgtttttcaacttccaaagagaaaatgtagccaaacaaggtttacctgagcaaaatg |
2258169 |
T |
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| Q |
219 |
gtgtgacacactttgaagctggtgacaaacgtgctaaggaatatgttagcttgcttaaatccaatgatcctgttggttttaaccttgttgatgttttggc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2258168 |
gtgtgacacactttgaagctggtgacaaacgtgctaaggaatatgttagcttgcttaaatccaatgatcctgttggttttaaccttgttgatgttttggc |
2258069 |
T |
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| Q |
319 |
ttggggttctttaggtcatattgttgcttactatatcttggctacttctagcaatggttatgatccta |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2258068 |
ttggggttctttaggtcatattgttgcttactatatcttggctacttctagcaatggttatgatccta |
2258001 |
T |
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