View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18769_low_8 (Length: 477)
Name: NF18769_low_8
Description: NF18769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18769_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 456
Target Start/End: Original strand, 3046751 - 3047200
Alignment:
| Q |
18 |
gttaacattcccctttaataaattaagctttttcggttagaatgttaatttccatttgagtatgaaagttgatatctcttctttggcacggtaaggtact |
117 |
Q |
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| T |
3046751 |
gttaacattcccctttaataaattaagctttttcggttagaatgttaatttccatttgagtatgaaagttgatatctcttctttggcacggtaaggtact |
3046850 |
T |
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| Q |
118 |
aaggttgctgtagaatgtgcctggttttggctgtgatggagcattga-ttttttcgatatggtttagtgttttgttaggagttgtattgtataatagagg |
216 |
Q |
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| T |
3046851 |
aaggttgctgtagaatgtgcctggttttggctgtgatggaccgttgatttttttcgatatggtttagtgttttgttaggagttgtattgtataatagagg |
3046950 |
T |
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| Q |
217 |
ttatttgtggctgtttttctggttttgacaagcataa----------acttggtttggattagctttttggtctgctgttatttgcatctgattttacaa |
306 |
Q |
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| T |
3046951 |
ttatttgtggctgtttttctggttttgacaagcataaacttggttttacttggtttggattagctttttggtgtgctgttatttgcatctgattttacaa |
3047050 |
T |
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| Q |
307 |
attgatttaatgttttgtttgtatggtgtaatagaggtcattgctggctgtttttctggtatggacatgcaaatacttgttctacttagtttggcttagc |
406 |
Q |
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| T |
3047051 |
attgatttaatgttttgtttgtatggtgtaatagaggtcattgctggctgtttttctggtatggacatgcaaatacttgttctacttagtttggcttagc |
3047150 |
T |
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| Q |
407 |
tttttggtctacttatatattatttgctaatgctacatagtggcatgatc |
456 |
Q |
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| T |
3047151 |
tttttggtctacttatatattatttgctaatgctacatagtggcatgatc |
3047200 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 38868176 - 38868131
Alignment:
| Q |
60 |
tgttaatttccatttgagtatgaaagttgatatctcttctttggca |
105 |
Q |
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| T |
38868176 |
tgttaatttccatttgagtatgaaaatggatatctattgtttggca |
38868131 |
T |
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