View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_high_11 (Length: 362)
Name: NF1876_high_11
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 39897934 - 39898218
Alignment:
| Q |
29 |
aaagaaacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaac |
128 |
Q |
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| T |
39897934 |
aaagaaacaagatgtgatgatagaatcttactagcagatatgatagactgatcgtc-ggatccacacttggttgttttctgaagtcaatgcaagtttaac |
39898032 |
T |
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| Q |
129 |
aaatttgcagttctaatagaataattatttcttctaggaatttcattttattagtataatcttatgcttatatatattactcactgaatgagcttaactt |
228 |
Q |
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| T |
39898033 |
aaatttgcagttctaatagaataattatttcttctaggaatttcattttattagtataatcttatgct----tatattactcactgaatgagcttaactt |
39898128 |
T |
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| Q |
229 |
tttcaatcgtatagtgctaattcctgtcatggtaaatggca---------tagtcagcatgtatctatgagctgtaactgaaataacatt |
309 |
Q |
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| T |
39898129 |
tttcaatcgtatagtgctaattcctgtcatggtaaatggcatgaaatatgtagtcagcatgtatctatgagctgtaactaaaataacatt |
39898218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 39874817 - 39875014
Alignment:
| Q |
34 |
aacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaacaaatt |
133 |
Q |
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| T |
39874817 |
aacaatatgtgatgatagaatcttactagcagaaa---taaactgatcatgaggatccacacttggttgttttctgaattcagcgcaagtttaacaaa-t |
39874912 |
T |
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| Q |
134 |
tgc---agttctaatagaa----taattatttcttctaggaatttcattttattagtataatcttatgcttatatatattactcactgaatgagcttaac |
226 |
Q |
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| T |
39874913 |
tgcacaagttcttatacaataactaatgatttcttctaggaatttcattttattagtatattattatg----tttatattactcactgaatgaacttaac |
39875008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 177
Target Start/End: Original strand, 39882933 - 39883082
Alignment:
| Q |
32 |
gaaacaagatgtgatgatagaatcttactagcagatacgatagactgatcgtgaggatccacacttggttgttttctgaagtcaatgcaagtttaacaaa |
131 |
Q |
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| T |
39882933 |
gaaacaagatgtgatgatagaatcttactagcagaaattgtagccggatcataaggatccacacttggttgttttctgaattcagcgcgagtttaacaaa |
39883032 |
T |
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| Q |
132 |
tttgc---agttctaatagaataat-tatttcttctaggaatttcatttt |
177 |
Q |
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| T |
39883033 |
tttgcacaagttctaatagaataatgaaattcttctaggaatttcatttt |
39883082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 39883096 - 39883134
Alignment:
| Q |
203 |
tattactcactgaatgagcttaactttttcaatcgtata |
241 |
Q |
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| T |
39883096 |
tattactcactgaatgagcttaactttttcaattgtata |
39883134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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