View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1876_high_12 (Length: 357)

Name: NF1876_high_12
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1876_high_12
NF1876_high_12
[»] chr4 (22 HSPs)
chr4 (21-341)||(2467182-2467502)
chr4 (57-274)||(5106469-5106686)
chr4 (51-261)||(2525425-2525632)
chr4 (52-195)||(2621400-2621540)
chr4 (54-252)||(2490801-2490996)
chr4 (139-250)||(2486062-2486173)
chr4 (121-228)||(5102293-5102400)
chr4 (51-237)||(2533983-2534166)
chr4 (51-254)||(2518903-2519103)
chr4 (47-262)||(2477249-2477464)
chr4 (51-253)||(5035292-5035491)
chr4 (63-188)||(2391263-2391385)
chr4 (58-195)||(2547221-2547355)
chr4 (63-103)||(2367989-2368029)
chr4 (215-270)||(2361143-2361198)
chr4 (133-188)||(2381635-2381690)
chr4 (223-277)||(2376388-2376442)
chr4 (133-178)||(2361217-2361262)
chr4 (133-186)||(2482529-2482582)
chr4 (63-103)||(2373555-2373595)
chr4 (63-111)||(2546826-2546874)
chr4 (63-103)||(12124527-12124567)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 2467182 - 2467502
Alignment:
Q  21 agcacagaataagtatgataatcaaggtccgtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2467182 agcacagaataagtatgataatcaaggtccgtaaggatgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaa 2467281  T
Q  121 aagcaattcggtaacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467282 aagcaattcggtaacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgag 2467381  T
Q  221 ggatttgaggtccaaagggaaagtggagattttgttaagaagtgcgttgaggtcactttctaccgagagagtgatgtcaattgatctgatattggggaac 320  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2467382 ggatttgaggtccaaagggaaagtggagattttggtaagaagtgcgttgaggtcactttctaccgagagagtgatgtcaattgatctgatattggggaac 2467481  T
Q  321 ctttcaaagagacgatgaagt 341  Q
    |||||||||||||||||||||    
T  2467482 ctttcaaagagacgatgaagt 2467502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 57 - 274
Target Start/End: Complemental strand, 5106686 - 5106469
Alignment:
Q  57 atgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaatttt 156  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||  ||||||| | | |  |||||||||||||||||||||  |||||||||||||    
T  5106686 atgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacacccgaagcaattcggtaacaagtgatagatgtcaaatttt 5106587  T
Q  157 tcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagattttgtt 256  Q
    |||||| |  |||||||||||||||||||  |  ||||| | | |||||||||||||||| |||  ||||||  |  ||||||||||  ||||||| ||     
T  5106586 tcatctttagggagaaagctcgcaacccaattttaggaaacttaatggggtggtagagagcgagcaatttgatatttaaagggaaagcagagatttggta 5106487  T
Q  257 aagaagtgcgttgaggtc 274  Q
     |||||  ||||||||||    
T  5106486 cagaagctcgttgaggtc 5106469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 261
Target Start/End: Original strand, 2525425 - 2525632
Alignment:
Q  51 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 150  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||  |||  ||   || || | ||||||||||| |||||||    
T  2525425 gtaaggatgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaata--aatctcagtt-gataacaagtgagagatgtca 2525521  T
Q  151 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 250  Q
    |||||||||| |  ||||| ||| | |||||| ||| |  ||||||| |   |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  2525522 aatttttcattttcttggacaaaacacgcaactcattttgaggaaccttgggggggtggtagagagtgagcgatttgaggtctaaagggaaagtggagat 2525621  T
Q  251 tttgttaagaa 261  Q
    || ||| ||||    
T  2525622 ttggtttagaa 2525632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 195
Target Start/End: Complemental strand, 2621540 - 2621400
Alignment:
Q  52 taaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaa 151  Q
    ||||| |||| |||||||||| ||||||||||||||||| |||||| ||||| ||||||  ||| | |  |   ||||||||||||||||| ||||||||    
T  2621540 taaggttgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttatta---attcggtaacaagtgagagatgtcaa 2621444  T
Q  152 atttttcatctctttggagaaagctcgcaacccatctgcaggaa 195  Q
    ||||||||| | |||||||||||||||||||||||||| |||||    
T  2621443 atttttcatatttttggagaaagctcgcaacccatctgtaggaa 2621400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 252
Target Start/End: Original strand, 2490801 - 2490996
Alignment:
Q  54 aggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaat 153  Q
    |||||||| || ||||||| |||||||||||||||||| || || ||||| ||||||| ||||   ||    ||||| ||||||||||| ||||||||||    
T  2490801 aggatgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgata---aacctcattcgataacaagtgagagatgtcaaat 2490897  T
Q  154 ttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagattt 252  Q
    ||||||||     ||| |||||||||||  ||| ||| |||||| | || || | |||||||| ||| |||||||||||||||||||||||||||||||    
T  2490898 ttttcatcgtcccggacaaagctcgcaattcatttgcgggaaccctgattggctcgtagagagcgagcgatttgaggtccaaagggaaagtggagattt 2490996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 250
Target Start/End: Original strand, 2486062 - 2486173
Alignment:
Q  139 tgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagg 238  Q
    |||| ||||||||||||||||||| |||||| ||||||||||   ||| |||||||| | | ||||| | |||||||||||| |||||||||||||||||    
T  2486062 tgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaagcctgatgggctcgtagagagtgagtgatttgaggtccaaagg 2486161  T
Q  239 gaaagtggagat 250  Q
    ||||||||||||    
T  2486162 gaaagtggagat 2486173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 5102400 - 5102293
Alignment:
Q  121 aagcaattcggtaacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgag 220  Q
    |||||||||||||||||||||  ||||||||||||||||||| || |||||| ||||||||||| | || ||||| | | |||||||||||||||| |||    
T  5102400 aagcaattcggtaacaagtgatagatgtcaaatttttcatcttttgggagaatgctcgcaacccttttgtaggaagcttaatggggtggtagagagcgag 5102301  T
Q  221 ggatttga 228  Q
     |||||||    
T  5102300 cgatttga 5102293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 237
Target Start/End: Original strand, 2533983 - 2534166
Alignment:
Q  51 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagc-aattcggtaacaagtgagtgatgtc 149  Q
    ||||||||||| ||||| |||| |||||||||||||||||| ||||| ||||| ||||||| |||||    |||  ||| | ||||||||||| |||||     
T  2533983 gtaaggatgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatat----agctcatttgataacaagtgagagatgtt 2534078  T
Q  150 aaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaag 237  Q
    |||||||||||||  ||||| |||||||| ||| ||| | |||||||  |    ||||||||||||||||| ||||||||||| ||||    
T  2534079 aaatttttcatcttcttggacaaagctcggaactcattttcaggaacactgtcagggtggtagagagtgagcgatttgaggtctaaag 2534166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 254
Target Start/End: Original strand, 2518903 - 2519103
Alignment:
Q  51 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 150  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| ||||||| |||||   |    |||   |||||||||||  ||||||    
T  2518903 gtaaggatgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatat---atttcatttaataacaagtgagatatgtca 2518999  T
Q  151 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 250  Q
    |||||||||| | ||  || |||||| ||||||| |||  |||||  || || || |||||||||||||| ||| ||||||| |||||||||||| | ||    
T  2519000 aatttttcatgttttgagacaaagcttgcaacccttctttaggaagggtgataggatggtagagagtgagcgatatgaggtctaaagggaaagtgcatat 2519099  T
Q  251 tttg 254  Q
    ||||    
T  2519100 tttg 2519103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 47 - 262
Target Start/End: Original strand, 2477249 - 2477464
Alignment:
Q  47 gtccgtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgat-atcaaaagcaattcggtaacaagtgagtga 145  Q
    |||||| |||||||| ||||| || | ||||||||||| || ||||||||| ||||| ||| ||||||| ||| || |||| | ||||||  || |  ||    
T  2477249 gtccgtgaggatgagttcttctagcaaagggaaacaattagaaatgaagaagagatcattcctgtcgatcatcgaa-gcaaattggtaaccggtaaaaga 2477347  T
Q  146 tgtcaaatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtg 245  Q
    ||| ||||||||||||| ||| || ||||||| |||||||| | ||||||||||  |||||||||||||||  || ||| ||||||| | ||  ||||||    
T  2477348 tgttaaatttttcatcttttttgacaaagctctcaacccatttacaggaaccgtggtggggtggtagagagctagcgatctgaggtctatagctaaagtg 2477447  T
Q  246 gagattttgttaagaag 262  Q
    || |||| | |||||||    
T  2477448 gatatttgggtaagaag 2477464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 253
Target Start/End: Original strand, 5035292 - 5035491
Alignment:
Q  51 gtaaggatgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtca 150  Q
    |||||||| || |||||||||| |||||||||||||||||| ||||||||||| ||||||| |||   |||    ||| | ||||||| ||| || || |    
T  5035292 gtaaggattagttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgat---aaatctcatttgataacaagcgagagacgtta 5035388  T
Q  151 aatttttcatctctttggagaaagctcgcaacccatctgcaggaaccgttatggggtggtagagagtgagggatttgaggtccaaagggaaagtggagat 250  Q
    || |||||||||  | ||| |||||||||||| ||| | |||||||| | |  | |||||| |||||||| ||||||||||  |||||| ||| ||||||    
T  5035389 aacttttcatcttctcggacaaagctcgcaactcattttcaggaaccctgacagcgtggtaaagagtgagcgatttgaggtttaaaggggaagcggagat 5035488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 188
Target Start/End: Complemental strand, 2391385 - 2391263
Alignment:
Q  63 tcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaatttttcatct 162  Q
    |||||||||| |||||| |||||| |||||||||| | ||| ||||||| |||   ||||  ||||||| ||||||| || || ||||||||||||||||    
T  2391385 tcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaa--aattcgg-aacaagtaagagaggtcaaatttttcatct 2391289  T
Q  163 ctttggagaaagctcgcaacccatct 188  Q
     |||||| |||||||| |||||||||    
T  2391288 ttttggacaaagctcggaacccatct 2391263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 195
Target Start/End: Original strand, 2547221 - 2547355
Alignment:
Q  58 tgagctcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaattttt 157  Q
    |||| ||||| |||| |||||||||||||||||||||||| | ||| ||||||  ||||   || |  |||  | ||||| |||| || |||||||||||    
T  2547221 tgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgata---aaggtgattttggaacaaatgagagacgtcaaattttt 2547317  T
Q  158 catctctttggagaaagctcgcaacccatctgcaggaa 195  Q
    ||||| ||  || |||||||||||||||| ||||||||    
T  2547318 catcttttcagacaaagctcgcaacccatttgcaggaa 2547355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 2368029 - 2367989
Alignment:
Q  63 tcttcgagtagagggaaacaatcagcaatgaagaaaagatc 103  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  2368029 tcttcgagtaaagggaaacaatcagcaatgaagaagagatc 2367989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 2361198 - 2361143
Alignment:
Q  215 agtgagggatttgaggtccaaagggaaagtggagattttgttaagaagtgcgttga 270  Q
    |||||| ||||||||||  |||||||||||||| |||||| | |||||||||||||    
T  2361198 agtgagtgatttgaggtttaaagggaaagtggatattttggtgagaagtgcgttga 2361143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 2381690 - 2381635
Alignment:
Q  133 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccatct 188  Q
    ||||||| || || |||||||||||||||| |||||| |||||||| |||||||||    
T  2381690 aacaagtaagagaggtcaaatttttcatctttttggacaaagctcggaacccatct 2381635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 2376442 - 2376388
Alignment:
Q  223 atttgaggtccaaagggaaagtggagattttgttaagaagtgcgttgaggtcact 277  Q
    |||||||||| ||||||||||||||||||| | ||| ||| |||| |||||||||    
T  2376442 atttgaggtctaaagggaaagtggagatttgggtaacaagagcgtcgaggtcact 2376388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 2361262 - 2361217
Alignment:
Q  133 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcg 178  Q
    |||||||||| ||||||||||||||||| | |||||| ||||||||    
T  2361262 aacaagtgagagatgtcaaatttttcatttttttggacaaagctcg 2361217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 2482529 - 2482582
Alignment:
Q  133 aacaagtgagtgatgtcaaatttttcatctctttggagaaagctcgcaacccat 186  Q
    |||||||||| ||||||||||||||||||| ||| || | ||||| ||||||||    
T  2482529 aacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 2373595 - 2373555
Alignment:
Q  63 tcttcgagtagagggaaacaatcagcaatgaagaaaagatc 103  Q
    |||||||| | |||||||||||||||||||||||| |||||    
T  2373595 tcttcgagcaaagggaaacaatcagcaatgaagaagagatc 2373555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 2546826 - 2546874
Alignment:
Q  63 tcttcgagtagagggaaacaatcagcaatgaagaaaagatcgttcttgt 111  Q
    |||||||||| ||| |||||||||||||||||||| | ||| |||||||    
T  2546826 tcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgt 2546874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 12124527 - 12124567
Alignment:
Q  63 tcttcgagtagagggaaacaatcagcaatgaagaaaagatc 103  Q
    ||||| |||| |||||||||||||||||||||||| |||||    
T  12124527 tcttctagtaaagggaaacaatcagcaatgaagaagagatc 12124567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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