View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_high_23 (Length: 239)
Name: NF1876_high_23
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_high_23 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 6669800 - 6669562
Alignment:
| Q |
1 |
agggaacaaagaaggcagagaacaactagtgcacatgtgtaaccaaatatgaatagaagttacctttcgcactcctgaactttcttgcatttggagcaac |
100 |
Q |
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| T |
6669800 |
agggaacaaagaaggcagagaacaactagtgcacatgtgtaaccaaatatgaatagaagttacctttcgcactcctgaactttcttgcatttggagcaac |
6669701 |
T |
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| Q |
101 |
accatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtgctacaatgaagttttgcttcgtaggcaatataatttggcc |
200 |
Q |
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| T |
6669700 |
accatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtgctacaatgaagttttgcttcgtaggcaatataatttggcc |
6669601 |
T |
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| Q |
201 |
gagctgatagatattgatcgaaaaagaaaaggaagaaag |
239 |
Q |
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| T |
6669600 |
gagctgatagatattgatcgaaaaagaaaaggaagaaag |
6669562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 62 - 239
Target Start/End: Original strand, 6778778 - 6778955
Alignment:
| Q |
62 |
acctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtgc |
161 |
Q |
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| T |
6778778 |
acctttcacactcttgaactttcttgcatttggtgcaacaccatcgcttcctagacactactggtttacagcagtgcatgcatgaatactgcaagtgtgc |
6778877 |
T |
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| Q |
162 |
tacaatgaagttttgcttcgtaggcaatataatttggccgagctgatagatattgatcgaaaaagaaaaggaagaaag |
239 |
Q |
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| T |
6778878 |
cacaataaagttttgcttcgtaggcaatataatttggccgagctgatagatattgattgaaaaggaaaaggaagaaag |
6778955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 6680625 - 6680486
Alignment:
| Q |
61 |
tacctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtg |
160 |
Q |
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|||||||| |||||||||| ||||||||||| | |||| |||| ||||||| ||| ||||| ||||| |||||||||||||||||| ||||||| | |
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| T |
6680625 |
tacctttcacactcctgaaatttcttgcattcagtgcaaaaccaacgcttcccagaaactatcacttcacggcagtgcatgcatgaatatcgcaagtgag |
6680526 |
T |
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| Q |
161 |
ctacaatgaagttttgcttcgtaggcaatataatttggcc |
200 |
Q |
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| T |
6680525 |
ctacgaggaagttttcttttgtaggcaatatattttggcc |
6680486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6778686 - 6778736
Alignment:
| Q |
1 |
agggaacaaagaaggcagagaacaactagtgcacatgtgtaaccaaatatg |
51 |
Q |
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| T |
6778686 |
agggaacaaagaaggccgagaacaactaatgcacatgtgtaaccaaatatg |
6778736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 49882798 - 49882659
Alignment:
| Q |
61 |
tacctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtg |
160 |
Q |
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| T |
49882798 |
tacctttcacactcctgaaatttcttgcattcagtgcaaaaccatcgcttcccagacactatcacttcatggcagtgtatgcatgaatactgcaagtgag |
49882699 |
T |
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| Q |
161 |
ctacaatgaagttttgcttcgtaggcaatataatttggcc |
200 |
Q |
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||| |||||||||| | | ||||||||||| ||||||| |
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| T |
49882698 |
ctatgatgaagttttccctggtaggcaatatcttttggcc |
49882659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 61 - 200
Target Start/End: Complemental strand, 46523182 - 46523043
Alignment:
| Q |
61 |
tacctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtg |
160 |
Q |
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||||||||||||||||||| || |||||||| | |||| |||||||||||| ||||||||| ||||| |||||| ||||||| ||| |||||||| | |
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| T |
46523182 |
tacctttcgcactcctgaatttccttgcattcagtgcaaaaccatcgcttcccagacactatcacttcacggcagtgtatgcatgcatattgcaagtgag |
46523083 |
T |
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| Q |
161 |
ctacaatgaagttttgcttcgtaggcaatataatttggcc |
200 |
Q |
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||| || |||| ||| | | |||||| ||||| ||||||| |
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| T |
46523082 |
ctataaggaagctttccctggtaggccatatattttggcc |
46523043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 36847022 - 36847161
Alignment:
| Q |
61 |
tacctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatgaatactgcaagtgtg |
160 |
Q |
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|||||||| |||||||||| |||||||||| | |||| |||||||||||| ||||||||| |||| |||||| ||||||||| | ||||||| | |
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| T |
36847022 |
tacctttcacactcctgaaacttcttgcattcagtgcaaaaccatcgcttcccagacactatcacttcatggcagtgtatgcatgaagatcgcaagtgag |
36847121 |
T |
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| Q |
161 |
ctacaatgaagttttgcttcgtaggcaatataatttggcc |
200 |
Q |
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|||| | |||||||| || |||||||||||| ||||||| |
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| T |
36847122 |
ctacgaggaagttttcttttgtaggcaatatattttggcc |
36847161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 6161478 - 6161563
Alignment:
| Q |
61 |
tacctttcgcactcctgaactttcttgcatttggagcaacaccatcgcttcctagacactattggttcacagcagtgcatgcatga |
146 |
Q |
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|||||||| |||||||||| |||||||||| | |||| |||||||||||| ||||||||| ||||| |||||||||| |||| |
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| T |
6161478 |
tacctttcacactcctgaaacttcttgcattcagtgcaaaaccatcgcttcccagacactatcacttcacggcagtgcatgtatga |
6161563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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