View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1876_high_25 (Length: 236)

Name: NF1876_high_25
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1876_high_25
NF1876_high_25
[»] chr7 (25 HSPs)
chr7 (1-43)||(41404108-41404150)
chr7 (163-220)||(23797436-23797493)
chr7 (163-220)||(31813406-31813463)
chr7 (162-214)||(41404009-41404061)
chr7 (162-220)||(6455543-6455601)
chr7 (170-220)||(12088899-12088949)
chr7 (162-220)||(21886461-21886519)
chr7 (165-214)||(46022642-46022691)
chr7 (162-214)||(23797342-23797394)
chr7 (163-214)||(10095714-10095765)
chr7 (181-220)||(30138876-30138915)
chr7 (178-220)||(6847286-6847328)
chr7 (170-216)||(21113304-21113350)
chr7 (162-220)||(25768613-25768671)
chr7 (165-214)||(7701185-7701234)
chr7 (163-220)||(25079202-25079259)
chr7 (163-220)||(28306310-28306367)
chr7 (162-214)||(2297325-2297377)
chr7 (162-214)||(2360443-2360495)
chr7 (172-220)||(3882556-3882603)
chr7 (169-220)||(25245138-25245190)
chr7 (162-214)||(25245237-25245289)
chr7 (178-214)||(37101705-37101741)
chr7 (168-216)||(38940220-38940268)
chr7 (168-216)||(43813125-43813173)
[»] chr1 (24 HSPs)
chr1 (162-220)||(6758540-6758598)
chr1 (155-220)||(45010825-45010890)
chr1 (162-220)||(39216097-39216155)
chr1 (162-220)||(31998277-31998335)
chr1 (162-220)||(33939385-33939443)
chr1 (162-220)||(45115258-45115316)
chr1 (162-220)||(46412776-46412834)
chr1 (163-220)||(49586084-49586141)
chr1 (168-220)||(8338675-8338727)
chr1 (168-220)||(34953984-34954036)
chr1 (178-220)||(3549789-3549831)
chr1 (162-220)||(14214544-14214602)
chr1 (170-220)||(42761455-42761505)
chr1 (163-220)||(7461356-7461413)
chr1 (169-214)||(9590745-9590790)
chr1 (163-220)||(13983200-13983257)
chr1 (163-220)||(23575406-23575463)
chr1 (165-214)||(24981935-24981984)
chr1 (168-216)||(1409141-1409189)
chr1 (168-220)||(10832082-10832134)
chr1 (162-214)||(29302058-29302110)
chr1 (162-214)||(29302159-29302211)
chr1 (162-214)||(39076002-39076054)
chr1 (168-216)||(39940578-39940626)
[»] scaffold0009 (2 HSPs)
scaffold0009 (163-220)||(146056-146113)
scaffold0009 (162-220)||(7745-7803)
[»] chr4 (28 HSPs)
chr4 (163-220)||(26920760-26920817)
chr4 (162-217)||(36072564-36072619)
chr4 (162-220)||(54713092-54713150)
chr4 (163-220)||(49481875-49481932)
chr4 (165-212)||(38381973-38382020)
chr4 (178-220)||(33377503-33377545)
chr4 (179-220)||(4484085-4484126)
chr4 (163-220)||(16537259-16537316)
chr4 (163-220)||(53176396-53176453)
chr4 (165-214)||(56364420-56364469)
chr4 (163-214)||(27537051-27537102)
chr4 (178-221)||(38716395-38716438)
chr4 (162-220)||(14450951-14451009)
chr4 (178-220)||(16170920-16170962)
chr4 (162-220)||(16468292-16468350)
chr4 (172-214)||(44755523-44755565)
chr4 (170-216)||(52281120-52281166)
chr4 (163-220)||(3669551-3669608)
chr4 (179-220)||(12672458-12672499)
chr4 (169-214)||(33376134-33376179)
chr4 (163-220)||(33693964-33694021)
chr4 (163-220)||(36786145-36786202)
chr4 (165-214)||(39160908-39160957)
chr4 (165-214)||(47181556-47181605)
chr4 (170-214)||(5816633-5816677)
chr4 (162-214)||(35151655-35151707)
chr4 (162-214)||(36072664-36072716)
chr4 (179-219)||(40952437-40952477)
[»] chr8 (20 HSPs)
chr8 (160-220)||(7258673-7258733)
chr8 (170-220)||(10117058-10117108)
chr8 (162-220)||(34326239-34326297)
chr8 (162-220)||(36916577-36916635)
chr8 (163-220)||(33070253-33070310)
chr8 (162-214)||(24287779-24287831)
chr8 (177-220)||(40640366-40640409)
chr8 (178-220)||(2296562-2296604)
chr8 (162-220)||(44521336-44521394)
chr8 (179-220)||(11335655-11335696)
chr8 (168-220)||(13290035-13290087)
chr8 (162-214)||(40640272-40640324)
chr8 (173-220)||(34326333-34326380)
chr8 (163-220)||(1739653-1739710)
chr8 (163-212)||(24471273-24471322)
chr8 (163-220)||(27518403-27518460)
chr8 (163-212)||(44319516-44319565)
chr8 (162-214)||(17087349-17087401)
chr8 (168-216)||(24820389-24820437)
chr8 (162-214)||(42749049-42749101)
[»] chr3 (21 HSPs)
chr3 (162-220)||(10872760-10872818)
chr3 (163-217)||(52215875-52215929)
chr3 (168-220)||(12744901-12744953)
chr3 (177-220)||(3648708-3648751)
chr3 (162-220)||(7601908-7601966)
chr3 (165-214)||(21217163-21217212)
chr3 (163-220)||(38677560-38677617)
chr3 (162-214)||(331892-331944)
chr3 (170-214)||(43818947-43818991)
chr3 (163-214)||(8504845-8504896)
chr3 (162-213)||(9170106-9170157)
chr3 (162-221)||(29752177-29752236)
chr3 (163-214)||(43818857-43818908)
chr3 (163-214)||(48191710-48191761)
chr3 (163-225)||(7882276-7882337)
chr3 (179-216)||(24596902-24596939)
chr3 (179-220)||(50466824-50466865)
chr3 (179-220)||(51060674-51060715)
chr3 (172-220)||(336070-336118)
chr3 (162-214)||(26121633-26121685)
chr3 (162-214)||(26244474-26244526)
[»] chr2 (22 HSPs)
chr2 (162-220)||(27331847-27331905)
chr2 (162-220)||(41805268-41805326)
chr2 (162-220)||(42530486-42530544)
chr2 (162-220)||(26234112-26234170)
chr2 (165-214)||(3098220-3098269)
chr2 (165-214)||(25270950-25270999)
chr2 (168-219)||(3121511-3121562)
chr2 (163-214)||(11726589-11726640)
chr2 (162-220)||(10602382-10602440)
chr2 (178-220)||(23377952-23377994)
chr2 (163-213)||(31101944-31101994)
chr2 (163-212)||(6074809-6074858)
chr2 (163-220)||(12116246-12116303)
chr2 (163-220)||(15119865-15119922)
chr2 (163-220)||(38465877-38465934)
chr2 (178-219)||(38618484-38618525)
chr2 (165-214)||(41056982-41057031)
chr2 (179-220)||(43732149-43732190)
chr2 (162-214)||(15119771-15119823)
chr2 (162-214)||(21183421-21183473)
chr2 (162-214)||(31024165-31024217)
chr2 (162-214)||(31102043-31102095)
[»] chr6 (13 HSPs)
chr6 (163-220)||(8449664-8449721)
chr6 (163-220)||(8458468-8458525)
chr6 (162-220)||(11746316-11746374)
chr6 (163-212)||(6894809-6894858)
chr6 (163-220)||(31398314-31398371)
chr6 (162-220)||(8146037-8146095)
chr6 (163-220)||(6560745-6560802)
chr6 (163-220)||(12383677-12383734)
chr6 (171-220)||(13281537-13281586)
chr6 (163-220)||(14310609-14310666)
chr6 (163-212)||(18097055-18097104)
chr6 (163-220)||(28577689-28577746)
chr6 (179-220)||(31714623-31714664)
[»] chr5 (22 HSPs)
chr5 (170-220)||(5984071-5984121)
chr5 (162-220)||(18033443-18033501)
chr5 (163-220)||(71254-71311)
chr5 (163-220)||(7329977-7330034)
chr5 (163-220)||(26045260-26045317)
chr5 (163-220)||(26141750-26141807)
chr5 (162-227)||(28518712-28518777)
chr5 (181-221)||(35032357-35032397)
chr5 (178-220)||(3100493-3100535)
chr5 (168-214)||(7330071-7330117)
chr5 (162-216)||(13356100-13356154)
chr5 (162-220)||(15549413-15549471)
chr5 (162-220)||(26300105-26300163)
chr5 (169-218)||(10437639-10437688)
chr5 (165-214)||(17625638-17625686)
chr5 (163-212)||(34867647-34867696)
chr5 (163-220)||(37944597-37944654)
chr5 (179-220)||(41814394-41814435)
chr5 (168-220)||(11795736-11795788)
chr5 (179-219)||(25037142-25037182)
chr5 (160-212)||(31963511-31963563)
chr5 (162-214)||(34867545-34867597)
[»] scaffold1640 (1 HSPs)
scaffold1640 (162-220)||(1225-1283)
[»] scaffold0024 (1 HSPs)
scaffold0024 (162-220)||(120233-120291)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41404150 - 41404108
Alignment:
Q  1 tgattttgtaagtttccatgcatatccaaacaaatgtttatac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  41404150 tgattttgtaagtttccatgcatatccaaacaaatgtttatac 41404108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 23797493 - 23797436
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  23797493 tacaccctccggtcactattataagtaaaattttgcattttagattcattcaattaat 23797436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 31813406 - 31813463
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| ||||||| |||||||||  |||||||| |||||||||||||||||||||||    
T  31813406 tacatcatccggtcactattataaacaaaaatttacattttagattcattcaattaat 31813463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 41404009 - 41404061
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||||||||||| |||||||||| |||||||  |||||||||||||||||    
T  41404009 atacatcctccggtcactattataagcaaaaattatcattttagattcattca 41404061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 6455543 - 6455601
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||| || |||||||||| |||||||| ||||||||||||||||| |||||    
T  6455543 atacaccctccgatcactattataagcaaaaatttacattttagattcattcatttaat 6455601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 12088949 - 12088899
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| |||||||||| |||| ||||||||| |||||||||||||||||    
T  12088949 tccggtcactattataagtaaaattttgcatttaagattcattcaattaat 12088899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 21886461 - 21886519
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||||||  ||||||||| ||||||||  ||||||||||||||||||||||    
T  21886461 atacaccctccggtcattattataagcaaaaatttatattttagattcattcaattaat 21886519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 46022691 - 46022642
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||| ||||||| ||||||||||||||||| | |||||||||||||||||    
T  46022691 catcatccggtcactattataagaaaaaatctacattttagattcattca 46022642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 23797342 - 23797394
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||| ||||| |||||||||| |||| |||||||||||||||||||||    
T  23797342 atacacccttcggtcactattataagcaaaattttgcattttagattcattca 23797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 10095714 - 10095765
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||| ||||||||| |||||||||| |||||||  |||||||||||||||||    
T  10095714 tacaccctccggtcactattataagcaaaaattaacattttagattcattca 10095765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Complemental strand, 30138915 - 30138876
Alignment:
Q  181 ttataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  30138915 ttataagtaaaaatttacattttagattcattcaattaat 30138876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 6847286 - 6847328
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||| |||||||||||||||| ||| |||||||||||    
T  6847286 ctattataagcaaaaatttgcattttatatttattcaattaat 6847328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 21113350 - 21113304
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    |||||||||||||| ||||||||||| || ||||||||| |||||||    
T  21113350 tccggtcgctattaaaagaaaaaattagctttttagatttattcaat 21113304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 25768613 - 25768671
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||| |||||||||| |||| ||  ||||||| |||||||||| ||||    
T  25768613 atacatcctccggtcactattataagtaaaagttatcattttatattcattcaagtaat 25768671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 7701185 - 7701234
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||| ||||||| |||||||||| |||||| | |||||||||||||||||    
T  7701185 catcatccggtcactattataagcaaaaatctacattttagattcattca 7701234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 25079202 - 25079259
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| ||| |||||| |||||| | | |||||||| ||||||||||||    
T  25079202 tacatcctccggtcactaatataagcaaaaatctactttttagatacattcaattaat 25079259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 28306310 - 28306367
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||| ||||| |||||||||  |||||| | ||||||||||||||||| |||||    
T  28306310 tacatccttcggtcactattataaccaaaaatctacattttagattcattcatttaat 28306367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 2297325 - 2297377
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| ||| |||||| |||||||||  |||||||||||||||    
T  2297325 atacaccctccggtcactaatataagcaaaaatttgatttttagattcattca 2297377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 2360443 - 2360495
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| ||| |||||| |||||||||  |||||||||||||||    
T  2360443 atacaccctccggtcactaatataagcaaaaatttgatttttagattcattca 2360495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 3882556 - 3882603
Alignment:
Q  172 cggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| ||||||||  |||||||||||||||||||||||    
T  3882556 cggtcactattataa-aaaaaattaacattttagattcattcaattaat 3882603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 25245138 - 25245190
Alignment:
Q  169 ctccggtcgctattataag-aaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||| |||||||||| |||||| || ||||||| |||||||||||||||    
T  25245138 ctccggtcactattataagcaaaaaaattacattttacattcattcaattaat 25245190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 25245289 - 25245237
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||||| ||||||   |||||||||||||||||    
T  25245289 atacaccctccggtcactattataagcaaaaatcaacattttagattcattca 25245237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 37101705 - 37101741
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||| |||| |||||||||||||||||||||    
T  37101705 ctattataagtaaaactttgcattttagattcattca 37101741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 38940220 - 38940268
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    |||||||||  ||||||||| |||||||  |||||||||||||||||||    
T  38940220 cctccggtcattattataagcaaaaattgacattttagattcattcaat 38940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 43813125 - 43813173
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    ||||||||| |||||||||| ||||||||   |||||||||||||||||    
T  43813125 cctccggtcactattataagcaaaaatttaatttttagattcattcaat 43813173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 6758540 - 6758598
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||    
T  6758540 atacatcctccggtcactattataagcaaaactttgcattttacattcattcaattaat 6758598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 45010825 - 45010890
Alignment:
Q  155 ctaagagatacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| ||||||| ||||||| |||||||||| |||| ||||||||||| |||||||||||||||    
T  45010825 ctaagacatacatcatccggtcactattataagcaaaattttgcattttaaattcattcaattaat 45010890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 39216097 - 39216155
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||| ||||||||||||| |||||||||||||    
T  39216097 atacaccctccggtcactattataagcaaaactttgcattttagactcattcaattaat 39216155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 31998335 - 31998277
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| |||| || |||||||||| |||| ||||||||||||||||||||| |||||    
T  31998335 atacatcatccgatcactattataagcaaaactttgcattttagattcattcatttaat 31998277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 33939443 - 33939385
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  33939443 atacaccctccggtcactattataagcaaaagtttacattttagattcattcatttaat 33939385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 45115316 - 45115258
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||||| | ||||||||||||||||| |||||    
T  45115316 atacaccctccggtcactattataagcaaaaatctacattttagattcattcatttaat 45115258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 46412834 - 46412776
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||| || |||||||||| |||||||| |||||| ||||||||||||||||    
T  46412834 atacaccctccgatcactattataagtaaaaatttacattttggattcattcaattaat 46412776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 49586084 - 49586141
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| |||||||||| |||| ||| ||||||| ||||||||| |||||    
T  49586084 tacatcctccggtcactattataagcaaaagtttacattttaaattcattcatttaat 49586141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 8338675 - 8338727
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||||||||| |||||| | ||||||||||||||||| |||||    
T  8338675 cctccggtcactattataagcaaaaatctacattttagattcattcatttaat 8338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 34954036 - 34953984
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| || |||||||||| ||||||||  ||||||||||||||||||||||    
T  34954036 cctccgatcactattataagcaaaaatttatattttagattcattcaattaat 34953984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 3549789 - 3549831
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||| |||||| | |||||||||||||||||||||||    
T  3549789 ctattataagcaaaaatctacattttagattcattcaattaat 3549831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 14214544 - 14214602
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||||||  | |||||| ||||||||||||||    
T  14214544 atacaccctccggtcactattataagcaaaaattcactttttaggttcattcaattaat 14214602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 42761455 - 42761505
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||  ||||||||| |||| ||| |||||||||||||||||||||||    
T  42761455 tccggtcattattataagcaaaactttacattttagattcattcaattaat 42761505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 7461413 - 7461356
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||  |||||||||| |||| |||| |||||||||||||| |||||||    
T  7461413 tacaccctccggtaactattataagtaaaactttgtattttagattcatttaattaat 7461356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 9590745 - 9590790
Alignment:
Q  169 ctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| || |||||||||| |||| |||||||||||||||||||||    
T  9590745 ctccgatcactattataagcaaaattttgcattttagattcattca 9590790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 13983200 - 13983257
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||  || |||||||||||||||   || ||||||||||||||||||    
T  13983200 tacatcctccggtcattaatataagaaaaaatttattttctagattcattcaattaat 13983257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 23575463 - 23575406
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| ||| |||||| ||||| || |||||||| |||||||| |||||    
T  23575463 tacatcctccggtcactaatataagtaaaaaattacattttaggttcattcatttaat 23575406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 24981984 - 24981935
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| ||||||   |||||||||||||||||    
T  24981984 catcctccggtcactattataagcaaaaatcaacattttagattcattca 24981935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 1409189 - 1409141
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    ||||||||| |||||||||| |||||||  | |||||||||||||||||    
T  1409189 cctccggtcactattataagcaaaaattatctttttagattcattcaat 1409141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 10832134 - 10832082
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||||||||  |||||| | |||||||| ||||||||||||||    
T  10832134 cctccggtcactattataaacaaaaatctacattttaggttcattcaattaat 10832082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 29302058 - 29302110
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| ||| |||||| |||||||||  |||||||||||||||    
T  29302058 atacaccctccggtcactaatataagcaaaaatttgatttttagattcattca 29302110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 29302211 - 29302159
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| ||| |||||| |||||||||  |||||||||||||||    
T  29302211 atacaccctccggtcactaatataagcaaaaatttgatttttagattcattca 29302159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 39076054 - 39076002
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||| |||| ||| |||||| |||| |||| ||||||||||||||||    
T  39076054 atacatcctcgggtcactagtataagcaaaagtttgaattttagattcattca 39076002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 39940626 - 39940578
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    |||||| || |||||||||| |||||||| | |||||||||||||||||    
T  39940626 cctccgatcactattataagtaaaaatttactttttagattcattcaat 39940578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 146113 - 146056
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||| |||||||||||||  ||||||||||||||||||||||||||||||||    
T  146113 tacaccctccagtcgctattataaacaaaaatttgcattttagattcattcaattaat 146056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 7803 - 7745
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| |||| ||| |||||||||| |||||| | ||||||||||||||||| |||||    
T  7803 atacatactcctgtcactattataagcaaaaatctacattttagattcattcatttaat 7745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 26920817 - 26920760
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||| || |||||||||| |||| |||||||||||||||||||||||||||    
T  26920817 tacatcctccgctcactattataagtaaaactttgcattttagattcattcaattaat 26920760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 217
Target Start/End: Original strand, 36072564 - 36072619
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaatt 217  Q
    ||||| ||||||||| |||||||||| |||| ||||||||||||||||||||||||    
T  36072564 atacaccctccggtcactattataagcaaaattttgcattttagattcattcaatt 36072619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 54713092 - 54713150
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||||||| ||||||||||||||||| |||||    
T  54713092 atacaccctccggtcactattataagcaaaaatttacattttagattcattcatttaat 54713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 49481875 - 49481932
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  49481875 tacatcctccggtcactattataagcaaaagtttacattttagattcattcatttaat 49481932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 38381973 - 38382020
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    |||||||||||| |||||||||| |||||||| |||||||||||||||    
T  38381973 catcctccggtcactattataagcaaaaatttacattttagattcatt 38382020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 33377545 - 33377503
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  33377545 ctattataagtaaaattttgcattttagattcattcaattaat 33377503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 4484085 - 4484126
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  4484085 tattataagtaaaactttgcattttagattcattcaattaat 4484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 16537259 - 16537316
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||| || |||||||||| |||| |||||||| |||||||||||| |||||    
T  16537259 tacatcctccgatcactattataagcaaaactttgcattatagattcattcatttaat 16537316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 53176453 - 53176396
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||| ||| |||||||||| ||||||||  |||||||||||||||| |||||    
T  53176453 tacatcctccagtcactattataagcaaaaatttatattttagattcattcagttaat 53176396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 56364469 - 56364420
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| |||||| | |||||||||||||||||    
T  56364469 catcctccggtcactattataagtaaaaatctacattttagattcattca 56364420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 27537051 - 27537102
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||||| ||||  ||||||||| |||||||| |||||||||||||||||    
T  27537051 tacatcctctggtcattattataagcaaaaatttacattttagattcattca 27537102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 38716438 - 38716395
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaatt 221  Q
    |||||||||  |||||||| ||||||||||||||||||||||||    
T  38716438 ctattataaacaaaaatttacattttagattcattcaattaatt 38716395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 14450951 - 14451009
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||| || |||||||||| |||||| | ||||||||||||||||| |||||    
T  14450951 atacaccctccgatcactattataagcaaaaatctacattttagattcattcatttaat 14451009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 16170920 - 16170962
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||    
T  16170920 ctattataaaaaaaactttacattttagattcattcaattaat 16170962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 16468350 - 16468292
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| ||||||||| ||||||| | ||||||||||| ||||| |||||    
T  16468350 atacaccctccggtcactattataataaaaaatctacattttagatttattcatttaat 16468292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 214
Target Start/End: Complemental strand, 44755565 - 44755523
Alignment:
Q  172 cggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| |||||||||| |||| |||||||||||||||||||||    
T  44755565 cggtcactattataagtaaaactttgcattttagattcattca 44755523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 52281120 - 52281166
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    ||||||| |||||||||| |||||| ||||||||| |||||||||||    
T  52281120 tccggtcactattataagcaaaaatatgcattttatattcattcaat 52281166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 3669551 - 3669608
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| |||| |||| |||||||||| ||| ||||  ||||||||||||||||||||||    
T  3669551 tacaccctctggtcactattataagcaaatatttatattttagattcattcaattaat 3669608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 12672458 - 12672499
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||  |||||||| |||||||||||||||||||||||    
T  12672458 tattataaacaaaaatttacattttagattcattcaattaat 12672499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 33376134 - 33376179
Alignment:
Q  169 ctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| || |||||||||| |||| |||||||||||||||||||||    
T  33376134 ctccgatcactattataagcaaaactttgcattttagattcattca 33376179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 33693964 - 33694021
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| |||||||||   |||||||| |||| |||||||||||||||| ||||||||||    
T  33693964 tacaccctccggtcataattataagcaaaattttgcattttagattcgttcaattaat 33694021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 36786145 - 36786202
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||  ||||||   |||||||||||||||||||||||    
T  36786145 tacaccctccggtccctattataaacaaaaatcaacattttagattcattcaattaat 36786202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 39160957 - 39160908
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||  |||||| | |||||||||||||||||    
T  39160957 catcctccggtcactattataaacaaaaatctacattttagattcattca 39160908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 47181556 - 47181605
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| |||||| | ||||||| |||||||||    
T  47181556 catcctccggtcactattataagcaaaaatctacattttaaattcattca 47181605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 5816677 - 5816633
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||| |||||||||  |||| |||||||||||||||||||||    
T  5816677 tccggtcactattataaataaaactttgcattttagattcattca 5816633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 35151655 - 35151707
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||||| |||| |||  ||||||||||||||||    
T  35151655 atacaccctccggtcactattataagtaaaattttatattttagattcattca 35151707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 36072716 - 36072664
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||| ||| ||| |||||||||| |||| ||||||||||| |||||||||    
T  36072716 atacatcttccagtcactattataagtaaaactttgcattttaaattcattca 36072664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 40952477 - 40952437
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaa 219  Q
    ||||||||| ||||||||  |||||||||||||||||||||    
T  40952477 tattataagcaaaaatttatattttagattcattcaattaa 40952437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 7258733 - 7258673
Alignment:
Q  160 agatacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||    
T  7258733 agatatatcctccggtcactattataagtaaaattttacattttagattcattcaattaat 7258673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 10117108 - 10117058
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  10117108 tccggtcactattataagcaaaaatttacattttagattcattcaattaat 10117058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 34326239 - 34326297
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||||  ||| ||||| |||| |||||||||||||||||||||||||||    
T  34326239 atacatcctccggtcattatcataagcaaaactttgcattttagattcattcaattaat 34326297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 36916577 - 36916635
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| ||||||| |||||||||| |||| ||||||||||||||| |||||||||||    
T  36916577 atacatcatccggtcactattataagtaaaattttgcattttagatttattcaattaat 36916635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 33070310 - 33070253
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||| ||||||||||||||||||||| |||||    
T  33070310 tacaccctccggtcactattataagcaaaattttgcattttagattcattcatttaat 33070253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 24287779 - 24287831
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||||| |||| |||||||||||||||||||||    
T  24287779 atacaccctccggtcactattataagcaaaactttgcattttagattcattca 24287831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Complemental strand, 40640409 - 40640366
Alignment:
Q  177 gctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||| |||| |||||||||||||||||||||||||||    
T  40640409 gctattataagcaaaactttgcattttagattcattcaattaat 40640366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 2296604 - 2296562
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  2296604 ctattataagtaaaattttgcattttagattcattcaattaat 2296562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 44521394 - 44521336
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||| || |||||||||| |||| |||| ||||||||||||||||||||||    
T  44521394 atacaccctccgatcactattataagcaaaactttgaattttagattcattcaattaat 44521336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 11335696 - 11335655
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  11335696 tattataagcaaaactttgcattttagattcattcaattaat 11335655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 13290035 - 13290087
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||||||||| ||||| || |||||| ||||||||||||||||    
T  13290035 cctccggtcactattataagcaaaaaattacattttggattcattcaattaat 13290087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 40640272 - 40640324
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||||| |||| |||| ||||||||||||||||    
T  40640272 atacaccctccggtcactattataagcaaaactttgtattttagattcattca 40640324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 34326380 - 34326333
Alignment:
Q  173 ggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| |||||||||| |||| ||||||||||| |||||||||||||||    
T  34326380 ggtcactattataagtaaaattttgcattttacattcattcaattaat 34326333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 1739710 - 1739653
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| ||| |||||| |||||||| | |||||||| ||||||||||||    
T  1739710 tacaccctccggtcactaatataagcaaaaatttactttttagatacattcaattaat 1739653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 24471322 - 24471273
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    |||||||||||||| |||||||||  |||||||  |||||||||||||||    
T  24471322 tacatcctccggtcactattataaacaaaaattaacattttagattcatt 24471273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 27518460 - 27518403
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||  |||||| | ||||||||||||||||| |||||    
T  27518460 tacaccctccggtcactattataaacaaaaatctacattttagattcattcatttaat 27518403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 44319516 - 44319565
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    |||||||||||||| |||||||||| |||| ||  |||||||||||||||    
T  44319516 tacatcctccggtcactattataagcaaaagttaacattttagattcatt 44319565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 17087349 - 17087401
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||||||||||| ||| |||||| |||| ||||  |||||||||||||||    
T  17087349 atacatcctccggtcactaatataagcaaaagtttgatttttagattcattca 17087401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 24820437 - 24820389
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    ||||||||| |||||||||| |||||||  | |||||||||||||||||    
T  24820437 cctccggtcactattataagcaaaaattctctttttagattcattcaat 24820389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 42749049 - 42749101
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||||||||||| ||| |||||| |||| ||||  |||||||||||||||    
T  42749049 atacatcctccggtcactaatataagcaaaagtttgatttttagattcattca 42749101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 10872818 - 10872760
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| ||||||||  ||||||||||||||||||||||    
T  10872818 atacaccctccggtcactattataagcaaaaatttatattttagattcattcaattaat 10872760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 52215875 - 52215929
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaatt 217  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| |||||    
T  52215875 tacatcctccggtcactattataagcaaaaatttacattttagattcatgcaatt 52215929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 12744901 - 12744953
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||||||||| ||||| || |||||||||||||||||||||||    
T  12744901 cctccggtcactattataagcaaaaacttacattttagattcattcaattaat 12744953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 220
Target Start/End: Original strand, 3648708 - 3648751
Alignment:
Q  177 gctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||||| ||||||||||||||| |||||||||||    
T  3648708 gctattataagaaaaactttgcattttagatttattcaattaat 3648751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 7601908 - 7601966
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||| || |||||||||| |||| |||| ||||||||||||||||||||||    
T  7601908 atacaccctccgatcactattataagcaaaactttgaattttagattcattcaattaat 7601966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 21217163 - 21217212
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| |||||| | |||||||||||||||||    
T  21217163 catcctccggtcactattataagcaaaaatctacattttagattcattca 21217212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 38677560 - 38677617
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  38677560 tacaccctccggtcactattataagcaaaagtttacattttagattcattcatttaat 38677617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 331944 - 331892
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||||| |||||||  |||||||||||||||||    
T  331944 atacaccctccggtcactattataagcaaaaattaacattttagattcattca 331892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 43818991 - 43818947
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||| |||||||||| |||| |||||||||||||||||||||    
T  43818991 tccggtcactattataagcaaaactttgcattttagattcattca 43818947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 8504845 - 8504896
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||| ||||||||| |||||||||| |||||| | |||||||||||||||||    
T  8504845 tacaccctccggtcactattataagcaaaaatctacattttagattcattca 8504896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 9170106 - 9170157
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattc 213  Q
    ||||| ||||||||| |||||||||| ||||| || ||||||||||||||||    
T  9170106 atacaccctccggtcactattataagcaaaaaattacattttagattcattc 9170157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 29752177 - 29752236
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaatt 221  Q
    ||||| ||||||||| |||||| ||  ||||| || ||||||||||||||||||||||||    
T  29752177 atacaccctccggtcactattacaaataaaaaattacattttagattcattcaattaatt 29752236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 43818857 - 43818908
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||| ||||||||| ||| |||||| |||| |||||||||||||||||||||    
T  43818857 tacaccctccggtcactactataagcaaaattttgcattttagattcattca 43818908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 48191710 - 48191761
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||||| |||||||||  |||||||  |||||||||||||||||    
T  48191710 tacatcctccggtcactattataaacaaaaattaacattttagattcattca 48191761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 7882276 - 7882337
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaattgatg 225  Q
    |||| ||||||||| |||||||||| |||||||  ||||||||||||||| |||||| |||||    
T  7882276 tacaccctccggtcactattataagcaaaaattaacattttagattcatt-aattaaatgatg 7882337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 24596902 - 24596939
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaat 216  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  24596902 tattataagtaaaaatttacattttagattcattcaat 24596939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 50466824 - 50466865
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| ||||||||  ||||||||||||||||||||||    
T  50466824 tattataagtaaaaatttatattttagattcattcaattaat 50466865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 51060674 - 51060715
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||||||| ||||||||||| |||||||||||    
T  51060674 tattataagcaaaaatttacattttagattaattcaattaat 51060715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 336070 - 336118
Alignment:
Q  172 cggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  336070 cggtcactattataagtaaaagtttacattttagattcattcatttaat 336118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 26121685 - 26121633
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||| | |||| ||||||||||||||| |||||    
T  26121685 atacaccctccggtcactattatagggaaaattttgcattttagatttattca 26121633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 26244526 - 26244474
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||||||||| |||||||| | |||| ||||||||||||||| |||||    
T  26244526 atacaccctccggtcactattataggcaaaattttgcattttagatttattca 26244474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 27331905 - 27331847
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||| |||||||||| ||||||   |||||||||||||||||||||||    
T  27331905 atacatcctccggtcactattataagcaaaaatcaacattttagattcattcaattaat 27331847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 41805268 - 41805326
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||| ||||||||||| |||||||||||||||    
T  41805268 atacaccctccggtcactattataagcaaaattttgcattttaaattcattcaattaat 41805326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 42530486 - 42530544
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| ||||||| |||||||||| |||||||| ||||||||||||||| |||||||    
T  42530486 atacatcatccggtcactattataagtaaaaatttacattttagattcatttaattaat 42530544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 26234170 - 26234112
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  26234170 atacaccctccggtcactattataagcaaaagtttacattttagattcattcatttaat 26234112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 3098269 - 3098220
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| |||||| | |||||||||||||||||    
T  3098269 catcctccggtcactattataagcaaaaatctacattttagattcattca 3098220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 25270999 - 25270950
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| |||||| | |||||||||||||||||    
T  25270999 catcctccggtcactattataagcaaaaatctacattttagattcattca 25270950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 3121562 - 3121511
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaa 219  Q
    ||||||||| |||||||||| |||||| | |||||||||| |||||||||||    
T  3121562 cctccggtcactattataagcaaaaatctacattttagatccattcaattaa 3121511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 11726640 - 11726589
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||| ||| |||||||||| |||||||  |||||||||||||||||    
T  11726640 tacatcctccagtcactattataagcaaaaattaacattttagattcattca 11726589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 10602440 - 10602382
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| ||||||||||||||||| | || ||||  ||||||||||||||    
T  10602440 atacaccctccggtcactattataagaaaaaatatacaatttaagttcattcaattaat 10602382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 23377952 - 23377994
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| || |||| |||||||||||||||||||||||||||    
T  23377952 ctattattagtaaaactttgcattttagattcattcaattaat 23377994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 31101944 - 31101994
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattc 213  Q
    |||| ||||||||| |||||||||| |||  ||||||||||||||||||||    
T  31101944 tacaccctccggtcactattataagcaaatgtttgcattttagattcattc 31101994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 6074809 - 6074858
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    |||| ||||||||| |||||||||  |||| |||||||||||||||||||    
T  6074809 tacaccctccggtcactattataaacaaaactttgcattttagattcatt 6074858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 12116246 - 12116303
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||   ||||||||| |||| |||| |||||||||||||||| |||||    
T  12116246 tacatcctccggttattattataagcaaaattttgtattttagattcattcatttaat 12116303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 15119922 - 15119865
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||||| | ||||||||||| ||||| |||||    
T  15119922 tacaccctccggtcactattataagcaaaaatctacattttagatttattcatttaat 15119865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 38465934 - 38465877
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||| ||| ||||| |||| |||||| | |||||||||||||||||||||||    
T  38465934 tacaccctccagtcactattgtaagcaaaaatctacattttagattcattcaattaat 38465877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 38618525 - 38618484
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaa 219  Q
    |||||||||| |||||||| ||||||| ||||||||||||||    
T  38618525 ctattataaggaaaaatttacattttacattcattcaattaa 38618484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 41057031 - 41056982
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| |||||| |||||||||| |||||| | |||||||||||||||||    
T  41057031 catccgccggtcactattataagcaaaaatctacattttagattcattca 41056982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 43732149 - 43732190
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| |||||| | |||||||||||||||||||||||    
T  43732149 tattataagcaaaaatatacattttagattcattcaattaat 43732190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 15119771 - 15119823
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| ||| ||||| |||||||||| |||||||  |||||||||||||||||    
T  15119771 atacacccttcggtcactattataagcaaaaattaacattttagattcattca 15119823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 21183473 - 21183421
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||||||||||| || ||||||| ||||||   |||||||||||||||||    
T  21183473 atacatcctccggtcactgttataagcaaaaatcaacattttagattcattca 21183421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 31024165 - 31024217
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||||||| ||||| |||||||||| ||||||   |||||||||||||||||    
T  31024165 atacatcctacggtcactattataagcaaaaatcaacattttagattcattca 31024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 31102095 - 31102043
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    ||||| |||||| ||  ||||||||| |||| |||||||||||||||||||||    
T  31102095 atacaccctccgatcattattataagcaaaagtttgcattttagattcattca 31102043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 8449721 - 8449664
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| |||||||||| |||||||   ||||||||||||||||||||||    
T  8449721 tacatcctccggtcactattataagcaaaaattaatattttagattcattcaattaat 8449664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 8458525 - 8458468
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| |||||||||| |||||||   ||||||||||||||||||||||    
T  8458525 tacatcctccggtcactattataagcaaaaattaatattttagattcattcaattaat 8458468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 11746374 - 11746316
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| |||| |||| || |||||| ||||||||| |||||||||||||||||||||||    
T  11746374 atacaccctctggtcactgttataaaaaaaaatttacattttagattcattcaattaat 11746316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 6894809 - 6894858
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    |||||||||||||| |||||||||  |||||||| |||||||||||||||    
T  6894809 tacatcctccggtcactattataaacaaaaatttacattttagattcatt 6894858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 31398371 - 31398314
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  31398371 tacaccctccggtcactattataagcaaaagtttacattttagattcattcatttaat 31398314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 8146095 - 8146037
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| ||| |||||| ||||| || ||||||||||||||||| |||||    
T  8146095 atacaccctccggtcactaatataagcaaaaaattacattttagattcattcatttaat 8146037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 6560802 - 6560745
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| ||| |||||| ||||| || ||||||||||||||||| |||||    
T  6560802 tacaccctccggtcactaatataagcaaaaaattacattttagattcattcatttaat 6560745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 12383734 - 12383677
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| ||||||| |||||||||  |||||| | ||||||||||| |||||||||||    
T  12383734 tacatcatccggtcactattataaacaaaaatctacattttagattaattcaattaat 12383677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 220
Target Start/End: Original strand, 13281537 - 13281586
Alignment:
Q  171 ccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| |||||||||| |||||| |  ||||||||||||||||||||||    
T  13281537 ccggtcactattataagcaaaaatctagattttagattcattcaattaat 13281586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 14310666 - 14310609
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| ||| |||||| |||||| || |||||||||||||||| |||||    
T  14310666 tacaccctccggtcactaatataagcaaaaatctgtattttagattcattcatttaat 14310609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 18097055 - 18097104
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    |||| ||||||||| |||||||||| |||| ||| |||||||||||||||    
T  18097055 tacaccctccggtcactattataagcaaaagtttacattttagattcatt 18097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 28577746 - 28577689
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||| || |||||| |||||| | | |||||||| ||||||||||||    
T  28577746 tacatcctccggtcgttaatataagcaaaaatatactttttagatacattcaattaat 28577689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 31714664 - 31714623
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||||| | |||||||| ||||||||||||||    
T  31714664 tattataagaaaaaatctacattttaggttcattcaattaat 31714623  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 5984121 - 5984071
Alignment:
Q  170 tccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||  ||||||||| |||| |||||||||||||||||||||||||||    
T  5984121 tccggtcattattataagcaaaactttgcattttagattcattcaattaat 5984071  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 18033501 - 18033443
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||| |||||||||| |||||| | ||||||||||| ||||| |||||    
T  18033501 atacatcctccggtcactattataagcaaaaatctacattttagatttattcatttaat 18033443  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 71254 - 71311
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||||| |  ||||||||||||||||||||||    
T  71254 tacaccctccggtcactattataagcaaaaatctatattttagattcattcaattaat 71311  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 7329977 - 7330034
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||| ||| ||| |||||||||| |||| ||||||||||||||||||||| |||||    
T  7329977 tacatcatccagtcactattataagcaaaactttgcattttagattcattcatttaat 7330034  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 26045260 - 26045317
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||  |||||||||| ||||||||  ||||||||||||||||||||||    
T  26045260 tacaccctccggttactattataagcaaaaatttatattttagattcattcaattaat 26045317  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 26141750 - 26141807
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||| ||||||||| |||||||||| |||| ||| ||||||||||||||||| |||||    
T  26141750 tacaccctccggtcactattataagcaaaagtttacattttagattcattcatttaat 26141807  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 28518712 - 28518777
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaattgatgat 227  Q
    |||||||||| |||| |||||||||| ||||||   |||||| ||||||||||||||||| |||||    
T  28518712 atacatcctctggtcactattataagcaaaaatcaacattttggattcattcaattaattaatgat 28518777  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 35032397 - 35032357
Alignment:
Q  181 ttataagaaaaaatttgcattttagattcattcaattaatt 221  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  35032397 ttataagcaaaaatttacattttagattcattcaattaatt 35032357  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 3100535 - 3100493
Alignment:
Q  178 ctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||  ||||||| |||||||||||||||||||||||    
T  3100535 ctattataagtgaaaatttacattttagattcattcaattaat 3100493  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 7330117 - 7330071
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||  ||||||||| |||| |||||||||||||||||||||    
T  7330117 cctccggtcattattataagcaaaactttgcattttagattcattca 7330071  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 13356100 - 13356154
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaat 216  Q
    ||||||||||||||| |||||||||| |||| ||| | |||||| ||||||||||    
T  13356100 atacatcctccggtcactattataagcaaaattttactttttaggttcattcaat 13356154  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 15549471 - 15549413
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| |||||||||  ||||||   |||||||||||||||||||||||    
T  15549471 atacaccctccggtcactattataaacaaaaatcaacattttagattcattcaattaat 15549413  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 26300105 - 26300163
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| ||| |||||| |||||||| | |||||||| ||||||||||||    
T  26300105 atacaccctccggtcactaatataagcaaaaatttactttttagatacattcaattaat 26300163  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 10437639 - 10437688
Alignment:
Q  169 ctccggtcgctattataagaaaaaatttgcattttagattcattcaatta 218  Q
    |||||||| |||||||||| |||| |||| |||||| |||||||||||||    
T  10437639 ctccggtcactattataagtaaaactttgtattttaaattcattcaatta 10437688  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 17625638 - 17625686
Alignment:
Q  165 catcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| |||||||||| |||||| | |||||||||||||||||    
T  17625638 catcctccggtcactattataag-aaaaatctacattttagattcattca 17625686  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 34867696 - 34867647
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    ||||| |||||||| ||| |||||| |||| |||||||||||||||||||    
T  34867696 tacattctccggtcactaatataagtaaaactttgcattttagattcatt 34867647  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 37944597 - 37944654
Alignment:
Q  163 tacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    |||||||||||||| ||| |||||| |||||||  | |||||||| ||||||||||||    
T  37944597 tacatcctccggtcactaatataagcaaaaattcactttttagatacattcaattaat 37944654  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 41814394 - 41814435
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  41814394 tattataggcaaaaatttacattttagattcattcaattaat 41814435  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 11795736 - 11795788
Alignment:
Q  168 cctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||| ||| |||||| ||||||   |||||||||||||||||||||||    
T  11795736 cctccggtcactaatataagcaaaaatcaacattttagattcattcaattaat 11795788  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 25037142 - 25037182
Alignment:
Q  179 tattataagaaaaaatttgcattttagattcattcaattaa 219  Q
    ||||||||| |||| ||||||||||||||||||||| ||||    
T  25037142 tattataagcaaaactttgcattttagattcattcatttaa 25037182  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 31963511 - 31963563
Alignment:
Q  160 agatacatcctccggtcgctattataagaaaaaatttgcattttagattcatt 212  Q
    ||||||| | ||||||| |||||||||  |||| |||||||||||||||||||    
T  31963511 agatacaccttccggtcactattataaacaaaattttgcattttagattcatt 31963563  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 34867545 - 34867597
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattca 214  Q
    |||||||||||| || |||||||||| |||  |||| ||||||||||||||||    
T  34867545 atacatcctccgatcactattataagcaaagttttgtattttagattcattca 34867597  T

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Target: scaffold1640 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1640
Description:

Target: scaffold1640; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 1283 - 1225
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||||||||||||| |||||||||| |||| ||  ||||||| |||||||||| ||||    
T  1283 atacatcctccggtcactattataagtaaaagttatcattttatattcattcaagtaat 1225  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 120291 - 120233
Alignment:
Q  162 atacatcctccggtcgctattataagaaaaaatttgcattttagattcattcaattaat 220  Q
    ||||| ||||||||| ||| |||||| |||||||| | |||||||| ||||||||||||    
T  120291 atacaccctccggtcactaatataagcaaaaatttactttttagatacattcaattaat 120233  T

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