View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_high_28 (Length: 211)
Name: NF1876_high_28
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 49854186 - 49854278
Alignment:
| Q |
8 |
ttatctcaacccaagataccattgttccactattggaggaggatattcaataaaaactttaattttcagtgttaatcttgcatactgaatcag |
100 |
Q |
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| T |
49854186 |
ttatctcaacccaagataccattgttccactattggaggaggatattcaataaaaactttaattttcagtgttaatcttgcattctgaatcag |
49854278 |
T |
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Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 49854335 - 49854429
Alignment:
| Q |
101 |
tgcagtccatgcaactggcattggctcatttgataactaaattactggcaaataggag-----tatctattagtaacagatatcctattcctata |
190 |
Q |
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| T |
49854335 |
tgcagtccatgcaactggcattggctcatttgataactaaattactggcaaataggagtatcttatctattagtaacatatatcctattcctata |
49854429 |
T |
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