View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1876_high_4 (Length: 538)

Name: NF1876_high_4
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1876_high_4
NF1876_high_4
[»] chr5 (14 HSPs)
chr5 (1-523)||(8528286-8528829)
chr5 (259-523)||(8534851-8535122)
chr5 (60-169)||(8535183-8535294)
chr5 (257-512)||(1600713-1600969)
chr5 (1-52)||(8535333-8535384)
chr5 (402-457)||(8640893-8640948)
chr5 (1-166)||(9074943-9075109)
chr5 (1-52)||(8677637-8677688)
chr5 (60-213)||(8548409-8548562)
chr5 (1-52)||(1600503-1600554)
chr5 (9-52)||(8548322-8548365)
chr5 (1-52)||(8644044-8644095)
chr5 (64-133)||(1600601-1600670)
chr5 (9-50)||(8636701-8636742)
[»] chr4 (1 HSPs)
chr4 (1-523)||(9442447-9442990)
[»] chr7 (1 HSPs)
chr7 (320-521)||(48362240-48362441)
[»] scaffold0627 (1 HSPs)
scaffold0627 (9-52)||(4492-4535)
[»] chr1 (1 HSPs)
chr1 (9-52)||(5130638-5130681)


Alignment Details
Target: chr5 (Bit Score: 437; Significance: 0; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 8528829 - 8528286
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttac 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||    
T  8528829 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttccttac 8528730  T
Q  85 aagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccatt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528729 aagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccatt 8528630  T
Q  185 ccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528629 ccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgc 8528530  T
Q  285 tttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatataccacc--taattacatctttggcttt 379  Q
    |||||||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  8528529 tttcacagctaatatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccacctttaattacatctttggcttt 8528430  T
Q  380 aatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatcttataaattttctttatactttcgtgttgatggaggtgtagaaaa 479  Q
    |||||||||||||       ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528429 aatagttaatgggaaaaaaatcatgtggacacaatcttttgttactaattacatcttataaattttctttatactttcgtgttgatggaggtgtagaaaa 8528330  T
Q  480 tgaatggacagttgttgtattgtcggttatttggatcttcttta 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8528329 tgaatggacagttgttgtattgtcggttatttggatcttcttta 8528286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 259 - 523
Target Start/End: Complemental strand, 8535122 - 8534851
Alignment:
Q  259 gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatata 355  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||   ||| |||||||||||||| ||||||| |||||  || |||||||||||    
T  8535122 gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagttattttccattatctaatatata 8535023  T
Q  356 ccacct--aattacatctttg--gctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatcttataaattttctttat 451  Q
    ||||||  |||||||||||||  ||| | |||||||||||        |||||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  8535022 ccacctttaattacatctttgtggctctgatagttaatggaaaaaaaatcacgtggacacaatcttttattactaattacatcttataactttcctttat 8534923  T
Q  452 actttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttcttta 523  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||| | || |||||||||||||||||||    
T  8534922 actttcgtgttgacggaggagaagaaaatgaatggacagttgttgtaatctcagttatttggatcttcttta 8534851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 60 - 169
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
Q  60 aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt 157  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || ||    
T  8535294 aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt 8535195  T
Q  158 atattttaaact 169  Q
    ||||||||||||    
T  8535194 atattttaaact 8535183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 257 - 512
Target Start/End: Original strand, 1600713 - 1600969
Alignment:
Q  257 aggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgt-------atatatttgttataattttagttcttttctgttgtctaa 349  Q
    ||||||| |||||||  |||||| ||||||| ||| |||||||||||||| |||       || | ||| |||||||| ||||| ||||  ||| |||||    
T  1600713 aggttgtgatgtttccgcaatcaattgcttttacaactaatatatttatggtgttgtttatattttttttttataattatagtttttttg-gttatctaa 1600811  T
Q  350 tatataccacct--aattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatcttataaattttct 447  Q
    ||| ||||||||  |||||||| | ||||| | ||||||||| ||       |||||||||| ||||||||||||||||||||||||   ||||||| ||    
T  1600812 tatctaccacctttaattacatatctggctctgatagttaataggaaaaaaatcacgtggacgcaatcttttgttactaattacatc---taaatttcct 1600908  T
Q  448 ttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttg 512  Q
     |||||||||||||||||||||| | ||||    ||||||||||||||||| |||| ||||||||    
T  1600909 atatactttcgtgttgatggaggaggagaa----aatggacagttgttgtaatgtcagttatttg 1600969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8535384 - 8535333
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  8535384 ggatgttttgaaaggtgacaatattgaggttctgaatatccactcaaggtaa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 402 - 457
Target Start/End: Complemental strand, 8640948 - 8640893
Alignment:
Q  402 acgtggacacaatcttttgttactaattacatcttataaattttctttatactttc 457  Q
    ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||    
T  8640948 acgtggacacaatctttcgttactaatgacatcttataaatttcctttatactttc 8640893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 9074943 - 9075109
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaattttaaat-ctgatggttgatgcttccttacaagtcatagtaattg 99  Q
    |||||| |||||||||| |||||| ||||| ||||||||||||||||||||| | | ||  | || ||  || ||  |||| |||||||||||||||||     
T  9074943 ggatgtcttgaaaggagacaatatcgaggtgctgaatatccactcaaggtaagaatgtagcttctaatactttatt-ttccgtacaagtcatagtaatta 9075041  T
Q  100 attgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cacttatattttaa 166  Q
    ||| ||||||| ||  |||| |||||||||||| | || |||||| ||||||| ||||||||||||||    
T  9075042 attttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaa 9075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8677688 - 8677637
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||||||||    
T  8677688 ggatgttgtgaaaggagacaatattgaggtgctgaatatccactcaaggtaa 8677637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 213
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
Q  60 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 158  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8548409 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 8548508  T
Q  159 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta 213  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | ||||||||    
T  8548509 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta 8548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1600503 - 1600554
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    |||||| |||||||| | |||||||||||| |||||||||||||||||||||    
T  1600503 ggatgtcttgaaaggggacaatattgaggtgctgaatatccactcaaggtaa 1600554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 8548322 - 8548365
Alignment:
Q  9 tgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    ||||||||| |||||||||||| |||||||||||||||| ||||    
T  8548322 tgaaaggagacaatattgaggtgctgaatatccactcaaagtaa 8548365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8644095 - 8644044
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    ||||||| ||||||||| ||||| |||| | |||||||||||||||||||||    
T  8644095 ggatgttgtgaaaggagacaatactgagatgctgaatatccactcaaggtaa 8644044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
Q  64 tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt 133  Q
    ||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| |||||||||||||    
T  1600601 tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt 1600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 8636742 - 8636701
Alignment:
Q  9 tgaaaggagtcaatattgaggttctgaatatccactcaaggt 50  Q
    ||||||||| |||||| ||||| |||||||||||||||||||    
T  8636742 tgaaaggagacaatatcgaggtgctgaatatccactcaaggt 8636701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 9442990 - 9442447
Alignment:
Q  1 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttac 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||| ||||    
T  9442990 ggatgttttgaaaggagtcaatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttctttac 9442891  T
Q  85 aagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccatt 184  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9442890 aagtcatagtaattgattgtaatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactattttgccatt 9442791  T
Q  185 ccatttggagaaaagaagacatgttgttaggttacttaggtagatatattctcacaacgacatgttg-----------gagaaaggttgtcatgtttcgt 273  Q
    ||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||           |||||||||||| |||||||||    
T  9442790 ccatttggagaaaagaaaacatgttgttaggttacttcggttgatatattctcacaacgacatgttggagacatgttggagaaaggttgtgatgtttcgt 9442691  T
Q  274 caatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatataccacc--taattaca 368  Q
    ||||||||||||||| ||||||||||||||||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  9442690 caatcatttgctttcgcagctaatatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccacctttaattaca 9442591  T
Q  369 tctttggctttaatagttaatgggnnnnnnntcacgtggacacaatcttttgttactaattacatcttataaattttctttatactttcgtgttgatgga 468  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  9442590 tctttggctttaatagttaatgggaaaaaaatcacgtggacacaatcttttgttactaattacatcttataaat-----------tttcgtgttgatgga 9442502  T
Q  469 ggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttcttta 523  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442501 ggcgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttcttta 9442447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 320 - 521
Target Start/End: Original strand, 48362240 - 48362441
Alignment:
Q  320 ttataattttagttcttttctgttgtctaatatataccacct--aattacatctttggctttaatagttaatgggnnnnnnntcacgtggacacaatctt 417  Q
    |||||||||||||| |||||  || |||||||| ||||||||  |||||||||| || || | |||||||||||        ||| |||| ||||||| |    
T  48362240 ttataattttagttattttcc-ttatctaatatctaccacctttaattacatctctg-ctctgatagttaatggaaaaaaaatcaggtgggcacaatcct 48362337  T
Q  418 ttgttactaattacatcttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatct 517  Q
    | ||||| ||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||  |||||||||| |||| |||||||||| ||    
T  48362338 tcgttaccaattacatcttataaatttcctttatactttcgtgttgatggaggacgagaaaatgaatgggaagttgttgtaatgtcagttatttggacct 48362437  T
Q  518 tctt 521  Q
    ||||    
T  48362438 tctt 48362441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 4535 - 4492
Alignment:
Q  9 tgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||    
T  4535 tgaaaggagacaatattgaggtgttgaatatccactcaaggtaa 4492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 5130681 - 5130638
Alignment:
Q  9 tgaaaggagtcaatattgaggttctgaatatccactcaaggtaa 52  Q
    ||||||||| |||||||||||| |||||||| ||||||||||||    
T  5130681 tgaaaggagacaatattgaggtgctgaatattcactcaaggtaa 5130638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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