View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_high_5 (Length: 534)
Name: NF1876_high_5
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 2e-69; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 172 - 325
Target Start/End: Original strand, 41864690 - 41864843
Alignment:
| Q |
172 |
ctcaataaatgaactcaactatattgcttccaaaaggggatggttcaagttggtggctccaagcttgtgtttcttcgtaaacaaattattcaaacccact |
271 |
Q |
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| T |
41864690 |
ctcaataaatgaactcaactatattgcttccaaaaggggatggttcaagttggtggttccaagcttgtgtttcttcgtaaacaaattattcagcccctct |
41864789 |
T |
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| Q |
272 |
cttttttgtgctccttagccccgccattcaacttcatttgattccactttatgc |
325 |
Q |
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| T |
41864790 |
cttttttgtgctccttagccccgccattcaacttcatttgtttccactttatgc |
41864843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 41864492 - 41864624
Alignment:
| Q |
1 |
gaattatcacaaaagctacaataaactaatgtaaaacatgtaaggagaaaattcttgagaaaacaaaacaaaccgatgcaaagagaaagcacacagatat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
41864492 |
gaattatcacaaaagctacaatgaactaatgtaaaacatgtaaggagaaaattcttgagaaaacaaaacaaaccgatacaaacagaaagcacacagatat |
41864591 |
T |
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| Q |
101 |
gaagagttaacattcatacgaagggttctttat |
133 |
Q |
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| T |
41864592 |
gaagagttaacattcatacgaagggttctttat |
41864624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 412 - 516
Target Start/End: Original strand, 41865000 - 41865104
Alignment:
| Q |
412 |
aacaaaaacatttcatcaccgaaagttacataatggaaggtagagaagaaagttggcgcaaagatggaagtgtcaatgtaaatctcgactatcaaaatac |
511 |
Q |
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| T |
41865000 |
aacaaaaacatttcatcaccggaaattacataatggaaggtagagaagaaagttggcgcaaagatggaagtctcaatgtaaatctcgactatcaaaacac |
41865099 |
T |
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| Q |
512 |
tgctc |
516 |
Q |
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||||| |
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| T |
41865100 |
tgctc |
41865104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 41864890 - 41864937
Alignment:
| Q |
373 |
ctcatcaataagttagaacacagtggaaattagtcatagaacaaaaac |
420 |
Q |
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| T |
41864890 |
ctcatcaataagttagaacacagtgggaattagtcatagaacaaaaac |
41864937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 325
Target Start/End: Complemental strand, 26451987 - 26451950
Alignment:
| Q |
288 |
agccccgccattcaacttcatttgattccactttatgc |
325 |
Q |
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| T |
26451987 |
agccccgccattcaacttcatttgattccactttatgc |
26451950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 13861358 - 13861395
Alignment:
| Q |
288 |
agccccgccattcaacttcatttgattccactttatgc |
325 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
13861358 |
agccccaccattcaacttcatttggttccactttatgc |
13861395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 52526654 - 52526691
Alignment:
| Q |
288 |
agccccgccattcaacttcatttgattccactttatgc |
325 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| |
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| T |
52526654 |
agccccaccattcaacttcatttggttccactttatgc |
52526691 |
T |
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