View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_high_6 (Length: 483)
Name: NF1876_high_6
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 33 - 465
Target Start/End: Original strand, 42527762 - 42528191
Alignment:
| Q |
33 |
cacaataaattgaaattgcttctagttgattttacaaattcattcattcattcaattgaaggtaataataaa-ccaataggggtttcatcaatattgaga |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42527762 |
cacaataaattgaaattgcttctagttgattttacaaattcattcattca----attgaaggtaataataaaaccaataggggtttcatcaatattgaga |
42527857 |
T |
|
| Q |
132 |
aagtaaattgattaacataatgtcaaggtctattcaagagaaaaagttagctgcaggacgtgttgtggcagtggcaattgagaacaacaaaacaagccaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42527858 |
aagtaaattgattaacataatgtcaaggtctattcaagagaaaaagttagctgcaggacgtgttgtggcagtggcaattgagaacaacaaaacaagccaa |
42527957 |
T |
|
| Q |
232 |
tatgcagctaaatgggctgttgataatcttcttcctaaagatcaacatctcttattagtccatgttagacaaaaagcttcttccattcctacaacaagta |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42527958 |
tatgcagctaaatgggctgttgataatcttcttcctaaagatcaacatctcttattagtccatgttagacaaaaagcttcttccattcctacaacaagta |
42528057 |
T |
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| Q |
332 |
attatttattattcttcattctaggcctaaatatttttcattgaatgatatattatttcagaataccatgcacacgttaattacttcaatgattcattaa |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528058 |
attatttattattcttcattctaggcctaaatatttttcattgaatgatatattatttcagaataccatgcacacgttaattacttcaatgattcattaa |
42528157 |
T |
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| Q |
432 |
tgcagctggaagccatgtatctgttgatgccaat |
465 |
Q |
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| T |
42528158 |
tgcagctggaagccatgtatctgttgatgccaat |
42528191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 79 - 473
Target Start/End: Original strand, 42519631 - 42520026
Alignment:
| Q |
79 |
ttcattcaattgaaggtaataataaa-ccaataggggtttcatcaatattgagaaagtaaattgattaacataatgtcaaggtctattcaagagaaaaag |
177 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519631 |
ttcattcaattgaaggtaataataaaaccaataggggtttcatcaatattgagaaagtaaattgattaacataatgtcaaggtctattcaagagaaaaag |
42519730 |
T |
|
| Q |
178 |
ttagctgcaggacgtgttgtggcagtggcaattgagaacaacaaaacaagccaatatgcagctaaatgggctgttgataatcttcttcctaaagatcaac |
277 |
Q |
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| T |
42519731 |
ttagctgcaggacgtgttgtggcagtggcaattgagaacaacaaaacaagccaatatgcagctaaatgggctgttgataatcttcttcctaaagatcaac |
42519830 |
T |
|
| Q |
278 |
atctcttattagtccatgttagacaaaaagcttcttccattcctacaacaagtaattatttattattcttcattctaggcctaaatatttttcattgaat |
377 |
Q |
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| T |
42519831 |
atctcttattagtccatgttagacaaaaagcttcttccattcctacaacaagtaattatttattattcttcattctaggcctaaatatttttcattgaat |
42519930 |
T |
|
| Q |
378 |
gatatattatttcagaataccatgcacacgttaattacttcaatgattcattaatgcagctggaagccatgtatctgttgatgccaatgatgatgt |
473 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42519931 |
gatatattatttcagaataccatgcacacgttaattacttcaatgattcattaatgcagctggaagccacgtatctgttgatgccaatgatgatgt |
42520026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 42519513 - 42519563
Alignment:
| Q |
34 |
acaataaattgaaattgcttctagttgattttacaaattcattcattcatt |
84 |
Q |
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||||||||| |||||| ||||||| |||||| ||||||||||||||||||| |
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| T |
42519513 |
acaataaatagaaatttcttctagctgatttcacaaattcattcattcatt |
42519563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 183 - 306
Target Start/End: Complemental strand, 35085657 - 35085534
Alignment:
| Q |
183 |
tgcaggacgtgttgtggcagtggcaattgagaacaacaaaacaagccaatatgcagctaaatgggctgttgataatcttcttcctaaagatcaacatctc |
282 |
Q |
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|||||||||||||||||| |||||||||||||| || |||||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||| ||| |
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| T |
35085657 |
tgcaggacgtgttgtggctgtggcaattgagaataataaaacaagccaacatgcagttaaatgggctgttgaaaatcttcttcccaaagatcaatgcctc |
35085558 |
T |
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| Q |
283 |
ttattagtccatgttagacaaaaa |
306 |
Q |
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|| ||| ||||||||| ||||||| |
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| T |
35085557 |
tttttaatccatgttaaacaaaaa |
35085534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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