View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_high_9 (Length: 384)
Name: NF1876_high_9
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 2 - 380
Target Start/End: Original strand, 18145098 - 18145476
Alignment:
| Q |
2 |
catcaatgtcatcagcaagctcaatcatccggccagaatatctctcagtaaacaaaccaagggacggtacgttatcatccatctcatagagattttgcag |
101 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18145098 |
catcaatgtcatcagcaagatcaatcatccggccagaatatctctcagtaaacaaaccaagggacggtacattatcatccatctcatagagattttgcag |
18145197 |
T |
|
| Q |
102 |
tgctcttattgaagattttcttacaccagcatatttgtcattcagtgtccacccaagatatttcaagtatacatccttcnnnnnnnttgatgggtatgac |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18145198 |
tgctcttattgaagattttcttacaccagcatatttgtcattcagtgtccacccaagatatttcaagtatacatccttcaaaaaaattgatgggtatgac |
18145297 |
T |
|
| Q |
202 |
aggatccatacaccgagcgattcaatacatgacattctaatatttggatcaaggtccctgtaacgatgcacaaataacccggtaaatatcttgcccatca |
301 |
Q |
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|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18145298 |
aggatccatacaccgagcgattcaatgcatgacattctaatatttggatcaaggttcctgtaacgatgcacaaataacccggtaaatatcttgcccatca |
18145397 |
T |
|
| Q |
302 |
tctcctccaacgatgttattttctcgtgcatatccgacaactttatatttagtgactccatccgaggccccttggtttt |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
18145398 |
tctcctccaacgatgttattttctcgtgcatatccgacaactttatatttagtgtctccatccgaggcccctcggtttt |
18145476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 373
Target Start/End: Complemental strand, 18220563 - 18220192
Alignment:
| Q |
2 |
catcaatgtcatcagcaagctcaatcatccggccagaatatctctcagtaaacaaaccaagggacggtacgttatcatccatctcatagagattttgcag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18220563 |
catcaatgtcatcagcaagctcaatcatccggccagaatatctctcagtaaacaaaccaagggacggtactttatcatccatctcatagagattttgcag |
18220464 |
T |
|
| Q |
102 |
tgctcttattgaagattttcttacaccagcatatttgtcattcagtgtccacccaagatatttcaagtatacatccttcnnnnnnnttgatgggtatgac |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18220463 |
tgctcttattgaagattttcttacaccagcatatttgtcattcagtgtccacccaagatatttcaagtatacatccttcaaaaaaattgatgggtatgac |
18220364 |
T |
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| Q |
202 |
aggatccatacaccgagcgattcaatacatgacattctaatatttggatcaaggtccctgtaacgatgcacaaataacccggtaaatatcttgcccatca |
301 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||| |
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| T |
18220363 |
aggatccatacaccgagcgattcaatgcatgacattctaatatttggatcaaggtcccggtaatgatgcacaaataacccagtaaatatcttgcccatca |
18220264 |
T |
|
| Q |
302 |
tctcctccaacgatgttattttctcgtgcatatccgacaactttatatttagtgactccatccgaggcccct |
373 |
Q |
| |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
18220263 |
tctcctccaacaatgttattttatcgtgcatatccgacaactttatatttagtgacttcatccgaggcccct |
18220192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 43841773 - 43841904
Alignment:
| Q |
2 |
catcaatgtcatcagcaagctcaatcatccggccagaatatctctcagtaaacaaaccaagggacggtacgttatcatccatctcatagagattttgcag |
101 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
43841773 |
catcaatgtcatccgcaagctcaatcatccggccagaaaatctctcagtaaacaaaccaagggtctgtatgttatcatccatctcatagagattttgcag |
43841872 |
T |
|
| Q |
102 |
tgctcttattgaagattttcttacaccagcat |
133 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |
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| T |
43841873 |
tgctcttattgaagtttttcttacaccagcat |
43841904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 280
Target Start/End: Original strand, 43842002 - 43842143
Alignment:
| Q |
139 |
tcattcagtgtccacccaagatatttcaagtatacatccttcnnnnnnnttgatgggtatgacaggatccatacaccgagcgattcaatacatgacattc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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| T |
43842002 |
tcattcagtgtccacccaagatatttcaagtataaatcctgcaaaaaaagtgatgggtatgacaggatccatgcaccgagtgattcaatgcatgacattc |
43842101 |
T |
|
| Q |
239 |
taatatttggatcaaggtccctgtaacgatgcacaaataacc |
280 |
Q |
| |
|
|||||||||| |||| ||||| ||| ||||| |||||||||| |
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| T |
43842102 |
taatatttgggtcaatgtcccggtagcgatgtacaaataacc |
43842143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 278 - 380
Target Start/End: Original strand, 43842258 - 43842360
Alignment:
| Q |
278 |
acccggtaaatatcttgcccatcatctcctccaacgatgttattttctcgtgcatatccgacaactttatatttagtgactccatccgaggccccttggt |
377 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| ||| |
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|
| T |
43842258 |
acccagtaaatatcttgcgcatcatctcttccaacagtgttattttctcgtgcatatccgaaaaccttttatttagtgactccatccgaggcccctcggt |
43842357 |
T |
|
| Q |
378 |
ttt |
380 |
Q |
| |
|
||| |
|
|
| T |
43842358 |
ttt |
43842360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 35129661 - 35129551
Alignment:
| Q |
215 |
cgagcgattcaatacatgacattctaatatttggatcaaggtccctgtaacgatgcacaaataacccggtaaatatcttgcccatcatctcctccaacga |
314 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| | || ||||| || |||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
35129661 |
cgagtgattcaatgcatgacattctaatatttgagttaatttccctatagcgatgcacaaataacctggtaaatatcttgctcatcatctcctccaacag |
35129562 |
T |
|
| Q |
315 |
tgttattttct |
325 |
Q |
| |
|
||||||||||| |
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|
| T |
35129561 |
tgttattttct |
35129551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 35136982 - 35136876
Alignment:
| Q |
67 |
ggtacgttatcatccatctcatagagattttgcagtgctcttattgaagattttcttacaccagcatat-ttgtcattcagtgtccacccaagatatttc |
165 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |||||||||||||||| ||||| ||| ||||||| | || ||||||| ||||||||||||||||||| |
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|
| T |
35136982 |
ggtacgtcatcatccacctcatagagattttttagtgctcttattgaagtttttcgtactccagcatttcttatcattcaatgtccacccaagatatttc |
35136883 |
T |
|
| Q |
166 |
aagtata |
172 |
Q |
| |
|
||||||| |
|
|
| T |
35136882 |
aagtata |
35136876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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