View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_11 (Length: 380)
Name: NF1876_low_11
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 12526443 - 12526192
Alignment:
| Q |
9 |
gagatgaataattggttagaatctatatatgctatattcttcttctttatgaaataaatgagtagagaaccaatcaatgaatgctagctaactgaacacg |
108 |
Q |
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| T |
12526443 |
gagatgaataattggttagaatctatatatgctatgttcttcttctttatgaaataaatgagtagagaaccaatcaatgaatgctagctaactgaacacg |
12526344 |
T |
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| Q |
109 |
aataattaaaggtgctgattttttcttacttgttttcatattttgactannnnnnncttatctcatcaaagaatcaaacatgatgaactttcaagaaagt |
208 |
Q |
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| T |
12526343 |
aataattaaaggtgctgattttttcttacttgttttcatattttgactatttttttcttatctcatcaaagaatcaaacatgatgaactttcaagaaagt |
12526244 |
T |
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| Q |
209 |
gagagttatttgttttgatacttacttgatctaattcttatgcaatagttgt |
260 |
Q |
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| T |
12526243 |
gagagttatttgttttgatacttacttgatctaattcttatgcaatagttgt |
12526192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 257 - 364
Target Start/End: Complemental strand, 12526141 - 12526034
Alignment:
| Q |
257 |
ttgtgatctgcgtcatttgtattcatctctcttttatctttgtaaaaaatgaaattattccctctaactttcctttagccttacaaattaagtaattaag |
356 |
Q |
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| T |
12526141 |
ttgtgatctgcgtcatttgtattcatctctcttttatctttgtgaaaaatgaaattattccctcaaactttcctttagccttacaaattaagtaattaag |
12526042 |
T |
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| Q |
357 |
tatcctat |
364 |
Q |
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| T |
12526041 |
tatcctat |
12526034 |
T |
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