View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1876_low_14 (Length: 330)

Name: NF1876_low_14
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1876_low_14
NF1876_low_14
[»] chr8 (15 HSPs)
chr8 (20-325)||(5313857-5314161)
chr8 (186-323)||(5290195-5290332)
chr8 (183-323)||(5306651-5306791)
chr8 (211-323)||(15125880-15125992)
chr8 (187-323)||(5282608-5282745)
chr8 (187-323)||(11833337-11833474)
chr8 (29-169)||(5281990-5282131)
chr8 (211-323)||(14949383-14949495)
chr8 (29-156)||(15126022-15126150)
chr8 (29-156)||(14949225-14949353)
chr8 (32-149)||(5289994-5290112)
chr8 (223-323)||(5351543-5351643)
chr8 (32-169)||(5307213-5307354)
chr8 (32-102)||(11833772-11833842)
chr8 (45-100)||(5351359-5351414)
[»] chr6 (4 HSPs)
chr6 (48-323)||(31526175-31526455)
chr6 (235-286)||(11756769-11756820)
chr6 (238-286)||(11663932-11663980)
chr6 (235-275)||(12093101-12093141)
[»] chr7 (1 HSPs)
chr7 (235-287)||(39505479-39505531)
[»] chr1 (1 HSPs)
chr1 (232-286)||(44812536-44812590)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 5314161 - 5313857
Alignment:
Q  20 caggtaagttactttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5314161 caggtaagttactttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttttctcttagggctgtcattacgc 5314062  T
Q  120 agtcctgtaattttgtaatgcagttagtttgatacactaaattgaggacacaatattttcattgtaattaacatgataaaagtgatttctccttacattg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5314061 agtcctgtaattttgtaatgcagttagtttgatacactaaattgaggacacaatattttcattgtaattaacatgat-aaagtgatttctccttacattg 5313963  T
Q  220 aacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattttagactgctctagctatttgaatccttt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5313962 aacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattgtagactgctctagctatttgaatccttt 5313863  T
Q  320 gcttct 325  Q
    ||||||    
T  5313862 gcttct 5313857  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 186 - 323
Target Start/End: Original strand, 5290195 - 5290332
Alignment:
Q  186 attaacatgataaaagtgatttctccttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagca 285  Q
    ||||||||||| |||||||  | | ||||||||||| || || |||||||| || |||||||| ||||||||||||||||| ||||||||||||||||||    
T  5290195 attaacatgattaaagtgacattttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatcagca 5290294  T
Q  286 tcattttagactgctctagctatttgaatcctttgctt 323  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  5290295 tcattgtagactgctctagctagttgaatcctttgctt 5290332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 183 - 323
Target Start/End: Complemental strand, 5306791 - 5306651
Alignment:
Q  183 gtaattaacatgataaaagtgatttctccttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatca 282  Q
    |||||||||||| ||||||| || | | ||||||||||| || || |||||||| || |||||||| ||||||||||||||||| ||||||||||||||     
T  5306791 gtaattaacatggtaaaagttatattttcttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatct 5306692  T
Q  283 gcatcattttagactgctctagctatttgaatcctttgctt 323  Q
    |||||| | |||||||||||||||| ||||||||| |||||    
T  5306691 gcatcactgtagactgctctagctagttgaatcctctgctt 5306651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 211 - 323
Target Start/End: Complemental strand, 15125992 - 15125880
Alignment:
Q  211 cttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattttagactgctctagctattt 310  Q
    ||||||||||| || || |||||||| || |||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| ||    
T  15125992 cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagctagtt 15125893  T
Q  311 gaatcctttgctt 323  Q
    |||||||||||||    
T  15125892 gaatcctttgctt 15125880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 323
Target Start/End: Original strand, 5282608 - 5282745
Alignment:
Q  187 ttaacatgataaaa-gtgatttctccttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagca 285  Q
    |||||||||||||| || || | | ||||||||||| || || |||||||| || |||||||| ||||| ||||||||||| |||||||| |||||||||    
T  5282608 ttaacatgataaaacgttatatttgcttacattgaatagtattgcagctgtatgagcatcaactgcactaaaaggatcatcaaggagataaatatcagca 5282707  T
Q  286 tcattttagactgctctagctatttgaatcctttgctt 323  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  5282708 tcattgtagactgctctagctagttgaatcctttgctt 5282745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 323
Target Start/End: Complemental strand, 11833474 - 11833337
Alignment:
Q  187 ttaacatgataaaa-gtgatttctccttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagca 285  Q
    |||||||||||||| || || | | ||||||||||| || || || ||||| || |||||||| ||||||||||||||||| |||||||||||||| |||    
T  11833474 ttaacatgataaaatgttatatttgcttacattgaaaagtattgctgctgtatgagcatcaactgcactgaaaggatcatcaaggagatagatatctgca 11833375  T
Q  286 tcattttagactgctctagctatttgaatcctttgctt 323  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  11833374 tcattatagactgctctagctagttgaatcctttgctt 11833337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 5281990 - 5282131
Alignment:
Q  29 tactttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgcagtcctgta 128  Q
    ||||||||||| || |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||  ||  |||| || ||||||||||    
T  5281990 tactttaccaagatagtatcaacttctgagagaaactccacttgatgagtaactagaatgactgttttctctcttaaagcattcatgacacagtcctgta 5282089  T
Q  129 attttgta-atgcagttagtttgatacactaaattgaggaca 169  Q
    || ||||| | |||||||||||||| | | ||| ||||||||    
T  5282090 atgttgtagaggcagttagtttgatgcgccaaaatgaggaca 5282131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 211 - 323
Target Start/End: Original strand, 14949383 - 14949495
Alignment:
Q  211 cttacattgaacagaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattttagactgctctagctattt 310  Q
    ||||||||||| || || |||||||| || |||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |  |    
T  14949383 cttacattgaatagtattgcagctgtatgagcatcaactgcactgaaaggatcatcaagaagatagatatcagcatcattgtagactgctctagcaagct 14949482  T
Q  311 gaatcctttgctt 323  Q
    |||||||||||||    
T  14949483 gaatcctttgctt 14949495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 15126150 - 15126022
Alignment:
Q  29 tactttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgcagtcctgta 128  Q
    ||||||||||| || ||||| ||||| |||||||||||||||||||| || |||| |||||||||||| |||||||  || ||||| || ||||||||||    
T  15126150 tactttaccaagatagtatcgacttccgagagaaactccacttgatgagtaactagaatgactgttttgtctcttaaagcagtcatgacacagtcctgta 15126051  T
Q  129 attttgta-atgcagttagtttgatacac 156  Q
    || ||||| ||||||||||||||||||||    
T  15126050 atgttgtagatgcagttagtttgatacac 15126022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 156
Target Start/End: Original strand, 14949225 - 14949353
Alignment:
Q  29 tactttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgcagtcctgta 128  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||| || || | ||||||||| || |||||||  || ||||| || ||||||||||    
T  14949225 tactttaccaagatagtatcgacttctgagagaaactccacttgatgagtaacgagaatgactgtcttgtctcttaaagcagtcatgacacagtcctgta 14949324  T
Q  129 attttgta-atgcagttagtttgatacac 156  Q
    || ||||| ||||||||||||||||||||    
T  14949325 atgttgtagatgcagttagtttgatacac 14949353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 149
Target Start/End: Original strand, 5289994 - 5290112
Alignment:
Q  32 tttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgcagtcctgtaatt 131  Q
    |||||||| || |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||  || ||||| || || |||||||||     
T  5289994 tttaccaagatagtatcaacttctgagagaaactccacttgatgagtaactagaatgactgttttctctcttaaagcagtcatgacacaatcctgtaatg 5290093  T
Q  132 ttgta-atgcagttagttt 149  Q
    ||| | |||||||||||||    
T  5290094 ttgcagatgcagttagttt 5290112  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 323
Target Start/End: Original strand, 5351543 - 5351643
Alignment:
Q  223 agaatagcagctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatcattttagactgctctagctatttgaatcctttgct 322  Q
    ||||| ||||| || |||||||| || ||||| ||||| ||||| || ||||| | |||||||||||| |||||||||||||||| |||||| |||||||    
T  5351543 agaattgcagcagtatgtgcatctactgcactaaaagggtcatcaagaagatatacatcagcatcattgtagactgctctagctagttgaattctttgct 5351642  T
Q  323 t 323  Q
    |    
T  5351643 t 5351643  T

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Target: chr8; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 32 - 169
Target Start/End: Complemental strand, 5307354 - 5307213
Alignment:
Q  32 tttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgcagtcctgt---a 128  Q
    |||||||| || |||||||||||||||||||||||||||||||| || |||| ||| | |||||||| |||||   |  |||| || |||||||||   |    
T  5307354 tttaccaagatagtatcaacttctgagagaaactccacttgatgagtaactagaataattgttttctttcttaaaacattcatgacacagtcctgtagca 5307255  T
Q  129 attttgta-atgcagttagtttgatacactaaattgaggaca 169  Q
    || ||||| |||||||||||||||||||  ||| ||||||||    
T  5307254 atgttgtagatgcagttagtttgatacaacaaaatgaggaca 5307213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 11833842 - 11833772
Alignment:
Q  32 tttaccaatattgtatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctct 102  Q
    |||||||| || |||||||||||||||||||| ||||||||||| || |||| ||||||||||||| ||||    
T  11833842 tttaccaagatagtatcaacttctgagagaaagtccacttgatgagtaactagaatgactgttttcgctct 11833772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 5351359 - 5351414
Alignment:
Q  45 tatcaacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctct 100  Q
    ||||||||||||  |||||||| ||||||||||||||||  |||||||||||||||    
T  5351359 tatcaacttctgtcagaaactctacttgatgtgtcactaggatgactgttttctct 5351414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 48 - 323
Target Start/End: Original strand, 31526175 - 31526455
Alignment:
Q  48 caacttctgagagaaactccacttgatgtgtcactaaaatgactgttttctctcttagggctgtcattacgcagtcctgtaattttgta-atgcagttag 146  Q
    |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||| | ||||||||||||||||||| ||||||||||    
T  31526175 caacttttgagagaaactccacttgatgtgtcacaagaatgactgttttctctcttagagcagtcataatgcagtcctgtaattttgtagatgcagttag 31526274  T
Q  147 tttgatacactaaattgaggacacaa----tattttcattgtaattaacatgataaaagtgatttctccttacattgaacagaatagcagctgtgtgtgc 242  Q
    |||||| ||| |   ||||||||  |    |||| | ||  |||||||||||| |||||||||  |||||||||||||||||||||||||| ||||| ||    
T  31526275 tttgatgcaccatgatgaggacaataggtttattataatactaattaacatgaaaaaagtgatagctccttacattgaacagaatagcagcagtgtgcgc 31526374  T
Q  243 atcaacagcactgaaaggatcatcgaggagatagatatcagcatcattttagactgctctagctatttgaatcctttgctt 323  Q
     ||||| || |||||||| ||||| |||||||||||||||||||| || || ||||||| ||||| |||||||||||||||    
T  31526375 gtcaactgcgctgaaagggtcatcaaggagatagatatcagcatcgttgtaaactgctcgagctagttgaatcctttgctt 31526455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 11756820 - 11756769
Alignment:
Q  235 gtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcat 286  Q
    ||||| |||||||||||||||||||||||||| | |||||| | ||||||||    
T  11756820 gtgtgcgcatcaacagcactgaaaggatcatccaagagatatacatcagcat 11756769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 11663980 - 11663932
Alignment:
Q  238 tgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcat 286  Q
    ||||||||||||||||| || |||||||| | |||||| ||||||||||    
T  11663980 tgtgcatcaacagcactaaatggatcatccaagagatatatatcagcat 11663932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 12093101 - 12093141
Alignment:
Q  235 gtgtgtgcatcaacagcactgaaaggatcatcgaggagata 275  Q
    ||||| |||||||||||||||||||||||||| | ||||||    
T  12093101 gtgtgcgcatcaacagcactgaaaggatcatccaagagata 12093141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 39505479 - 39505531
Alignment:
Q  235 gtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcatc 287  Q
    |||||||| ||||| |||||||| || || |||||||||||||||||||||||    
T  39505479 gtgtgtgcgtcaactgcactgaaggggtcgtcgaggagatagatatcagcatc 39505531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 44812590 - 44812536
Alignment:
Q  232 gctgtgtgtgcatcaacagcactgaaaggatcatcgaggagatagatatcagcat 286  Q
    ||||| |||||||||||||||||||| |||||||| | || ||| ||||||||||    
T  44812590 gctgtttgtgcatcaacagcactgaatggatcatccaagatatatatatcagcat 44812536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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