View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_15 (Length: 322)
Name: NF1876_low_15
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 45304423 - 45304145
Alignment:
| Q |
18 |
aactttgggttgggacattcctcccttaatcaatcaccaaaaagtcttttaaggaataataatcataaggatctttatccacccactaagcactgattat |
117 |
Q |
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| T |
45304423 |
aactttgggttgggacattcctcccttaatcaatcaccaaaaagtcttttaaggaataataatcataaggatctttatccacccactaagcactgattat |
45304324 |
T |
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| Q |
118 |
atgcatnnnnnnnnnnnnnnnttagataactagtaaaaagtagtaacttatatgcagtaatgcacaaagtaactaggtataggggaaagtaagaaaggac |
217 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45304323 |
atgcatagagagagaga----ttagataactagtaaaaagtagtaacttatatgcagcaatgcacaaagtaactaggtataggggaaagtaagaaaggac |
45304228 |
T |
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| Q |
218 |
catagtatagtaggtaagaaaagaaaagaaaaggtttcgttgtagtagtaatttgttgggaaatgaaaagggtcctaaaagctgcattacttc |
310 |
Q |
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||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45304227 |
cat-----agtaggt-----aagaaaagaaaaggtttcgttgtagtagtaatttgttgggaaatgaaaagggtcctaaaagctgcattccttc |
45304145 |
T |
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