View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_16 (Length: 299)
Name: NF1876_low_16
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 14508220 - 14507953
Alignment:
| Q |
17 |
atgaaacggcaaatttaaaattttcaacaaatcataaacaggatcaggaaggttctacaaaataatgccggagattatgagaaagaaagcattgattaat |
116 |
Q |
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| T |
14508220 |
atgaaacagcaaatttaaaattttcaacaaatcataaacaggatcaggaaggttctacaaaataatgccggagattatgagaaagaaagcattgattaat |
14508121 |
T |
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| Q |
117 |
ccatcttgacaaagaaaccgtttcatacatagcaaactaacacaacaaaattttattccacagccatacttattgcatttataatcattatttgcactaa |
216 |
Q |
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| T |
14508120 |
ccatcttgacaaagaaaccgtttcatacatagcaaactaacacaacaaaattttattccacagccatatttattgcatttataatcattatttgcactaa |
14508021 |
T |
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| Q |
217 |
tgatatatgcaaaataatcacagctgcaaatttagtttaaaactattttaaatcaagcaacctattga |
284 |
Q |
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| T |
14508020 |
tgatatatgcaaaataatcacagctgcaaatttagtttaaaactattttaaatcaagcaacctattga |
14507953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 16978021 - 16978070
Alignment:
| Q |
96 |
agaaagaaagcattgattaatccatcttgacaaagaaaccgtttcataca |
145 |
Q |
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| T |
16978021 |
agaaagaaagcattgattaatccattctgatcaagaaaccatttcataca |
16978070 |
T |
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