View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_18 (Length: 270)
Name: NF1876_low_18
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 5 - 254
Target Start/End: Complemental strand, 43585887 - 43585638
Alignment:
| Q |
5 |
gaggagcacagatcacaaaagctacaaaacaacctcgatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagat |
104 |
Q |
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| T |
43585887 |
gaggaacacaaatcacaaaagctacaaaacaacctcaatcaaatcaaaaatcactagccaaaggtacatggtctgagggcatgaagacatagctatagat |
43585788 |
T |
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| Q |
105 |
gacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgcaggcccgaatgaacgtgccgga |
204 |
Q |
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| T |
43585787 |
gacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttaaaactgcaggcccgaatgaacgtgccgga |
43585688 |
T |
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| Q |
205 |
ttcattgacccaccagagaatggtcctgcagctaagatattggcaccaac |
254 |
Q |
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| T |
43585687 |
ttcattgacccaccagagaatggtcctgcagctaagatattggcaccaac |
43585638 |
T |
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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 83 - 254
Target Start/End: Original strand, 4188994 - 4189165
Alignment:
| Q |
83 |
gcatgaagacatagctatagatgacaccagccaaaccaccaccaataagaggtccaacccaatagatccagttgttatggtagtcaccacttacaaccgc |
182 |
Q |
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| T |
4188994 |
gcatgaacacattgccatagataagcccagccaaaccaccaccaataagaggcccagcccaatagatccagttgtcatggaaatttccactaacaactgc |
4189093 |
T |
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| Q |
183 |
aggcccgaatgaacgtgccggattcattgacccaccagagaatggtcctgcagctaagatattggcaccaac |
254 |
Q |
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| T |
4189094 |
aggcccaaaagatcttgccgggttcattgacccgccagagaatgggcctgcagccaatatgttggcaccaac |
4189165 |
T |
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