View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_20 (Length: 267)
Name: NF1876_low_20
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 43359936 - 43360166
Alignment:
| Q |
19 |
gaatgattgattgactcatgcgccgctatagtactctccttctcttctcctactaaaaatgtatctattt-gtaaatatcataaataatggattccactt |
117 |
Q |
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| T |
43359936 |
gaatgattgattgactcatgcgccgctatagtactctccttctc-----ctactaaaaatgtatctattttgtaaatatcataaataatggattccactt |
43360030 |
T |
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| Q |
118 |
ttgcacaatataggagaatagtgtctttaatttgttccttggaagaaaaatagggttttggcttggaactgttcaagtgcaataaaaaaggttctctcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43360031 |
ttgcacaatataggagaatagtgtctttaatttgttccttggaagaaaaatagggttttggcttggaactgttcaagtgcaataaaaaaggttctctcaa |
43360130 |
T |
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| Q |
218 |
ttaattcttgaattgatgttaatagtaagtaataat |
253 |
Q |
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| T |
43360131 |
ttaattcttgaattgatgttaatagtaagtaataat |
43360166 |
T |
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