View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_22 (Length: 249)
Name: NF1876_low_22
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_22 |
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| [»] scaffold0438 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 44919368 - 44919601
Alignment:
| Q |
6 |
aaattctaattataaccggcgcacgaactaataactcatagttcgacaaaccttataccaaaccatcaataagaaaattttaaactaattttcgattcaa |
105 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44919368 |
aaattctaattataaccggcgcacgaaccaatacctcatagttcgacaaaccttataccaaaccattaataagaaaattttaaactaattttcgattcaa |
44919467 |
T |
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| Q |
106 |
aatcatgtttactgaaatttcgaaaaagtaatctctataatttcaccatttacttgcaaaaagctatcagccccatgtggaagtctcatttgtttccaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44919468 |
aatcatgtttactgaaatttcgaaaaagtaatctctataatttcaccatttacttgcaaaaagctatcagccctatgtggaagtctcatttgtttccaaa |
44919567 |
T |
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| Q |
206 |
ctgtgatttattttggtctttgatctgtctcatt |
239 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
44919568 |
ctgtgatttattttggtctttgatctgtctcatt |
44919601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 2886522 - 2886405
Alignment:
| Q |
23 |
ggcgcacgaactaataactcatagttcgacaaacctta-taccaaaccatcaataagaaaattttaaactaa-ttttcgattcaaaatcat-gtttactg |
119 |
Q |
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|||||||||||||||| || |||||||| ||| ||| | |||||||| || |||||| || || |||||||| ||||||||||| |||||| |||||||| |
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| T |
2886522 |
ggcgcacgaactaataccttatagttcggcaagcctcattaccaaacaataaataagcaatttctaaactaacttttcgattcagaatcatggtttactg |
2886423 |
T |
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| Q |
120 |
aaatttcgaaaaagtaat |
137 |
Q |
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| T |
2886422 |
aaattttgaaagagtaat |
2886405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 2891797 - 2891664
Alignment:
| Q |
6 |
aaattctaattataaccggcgcacgaactaataactcatagttcgacaaaccttat-accaaaccatcaataagaaaattttaaactaa-ttttcgattc |
103 |
Q |
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||||||||||| | |||| |||| ||||||||| ||||||||| ||||||| || ||||||| || |||||| || |||||||| || ||||| |||| |
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| T |
2891797 |
aaattctaattgtgaccgacgcatgaactaatacctcatagtttagcaaacctcatgaccaaacgataaataagcaatttttaaaccaacttttcaattc |
2891698 |
T |
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| Q |
104 |
aaaatcat-gtttactgaaatttcgaaaaagtaa |
136 |
Q |
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|||||||| ||| ||||||||||||||| ||||| |
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| T |
2891697 |
aaaatcatggttaactgaaatttcgaaagagtaa |
2891664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0438 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0438
Description:
Target: scaffold0438; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 7336 - 7476
Alignment:
| Q |
11 |
ctaattataaccggcgcacgaactaataactcatagttcgacaaaccttat-accaaaccatcaataagaaaattttaaactaattttcgattcaaaatc |
109 |
Q |
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|||||| | ||||||||||||||||||| ||||||||||| ||| ||| || ||||| || ||||| || ||| || |||| ||||||||||||||| |
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| T |
7336 |
ctaattgtgaccggcgcacgaactaatacctcatagttcggcaagcctgatgaccaacgaattaataaacaattttcaagctaactttcgattcaaaatc |
7435 |
T |
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| Q |
110 |
atgtttactgaaatttcgaaaaagtaatctctataatttca |
150 |
Q |
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| T |
7436 |
ttgtttacttaaatttcgacagagtaacccctatattttca |
7476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 27651668 - 27651567
Alignment:
| Q |
28 |
acgaactaataactcatagttcgacaaaccttat-accaaaccatcaataagaaaattttaaactaattttcgattcaaaatcatgtttactgaaatttc |
126 |
Q |
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||||||||||| || |||||||| ||| ||| || |||||| || ||||| || ||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
27651668 |
acgaactaatagcttatagttcggcaagcctgatgaccaaagaattaataaacaattttcaagctaactttcgattcaaaatcatgtttactgaaatttc |
27651569 |
T |
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| Q |
127 |
ga |
128 |
Q |
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|| |
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| T |
27651568 |
ga |
27651567 |
T |
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