View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_23 (Length: 247)
Name: NF1876_low_23
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 52262656 - 52262892
Alignment:
| Q |
1 |
catctttcaaatctcccttcacaattctcttaaacaaatccgatttctcgaaaacctgttcatcagaataagaaccaggccaaccaatacacacgttagt |
100 |
Q |
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| T |
52262656 |
catctttcaaatctcccttcacaattctcttaaacaaatccgatttctcgaaaacctattcatcagaataagaaccaggccaaccaatacacacgttagt |
52262755 |
T |
|
| Q |
101 |
gaaaatccctttagactcaaccacaccctgaacagtaaaagagtaagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcgca |
200 |
Q |
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| T |
52262756 |
gaaaatccctttagactcaaccacaccctgaacagtaaaagagtaagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcaca |
52262855 |
T |
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| Q |
201 |
ttggagtttggtgcaattatgggaatatgagtagtat |
237 |
Q |
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| T |
52262856 |
ttggagttaggtgcaattatgggaatatgagtagtat |
52262892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 229
Target Start/End: Original strand, 52251055 - 52251239
Alignment:
| Q |
42 |
gatttctcgaaaacctgttcatcagaataagaaccaggccaaccaatacacacgttagtgaaaatccctttagactcaaccacaccctgaacagtaaaag |
141 |
Q |
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|||||||| ||||| || |||||| |||||||||||| |||||| | | || | |||||||| |||||||| ||||||||||| |||||||||| || |
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| T |
52251055 |
gatttctccaaaacttgatcatcattataagaaccagggtaaccaagaaaaacatcagtgaaaacccctttagcatcaaccacaccttgaacagtaacag |
52251154 |
T |
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| Q |
142 |
agtaagaatttttcttgttcctctgagtgtgtcttttattgaaataataagaattcgcattggagtttggtgcaattatgggaatatg |
229 |
Q |
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| T |
52251155 |
agtatgcagttttctggttcctctgagtctgcctcttattga---aataagaattcacattgttcttaggtgcaattattggaatatg |
52251239 |
T |
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