View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_24 (Length: 240)
Name: NF1876_low_24
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6669561 - 6669337
Alignment:
| Q |
1 |
atcagattacgcagacatatgtaatgtaaacattgtaaaagagaagtcagtaatgtcccaaatgcgttaatgcagcagggaatcagaatgtctttagatg |
100 |
Q |
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| T |
6669561 |
atcagattacgcagacatatgtaatgtaaacattgtaaaagagaagtcagtaatgtcccaaatgcgttaatgcagcagggaatcagaatgtctttagatg |
6669462 |
T |
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| Q |
101 |
aagttaaaggagaagtttgacataccttttgcatcaccagaatgtctttagctttggctttgggaggattgacatatcccatggcctttagagatcgact |
200 |
Q |
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| T |
6669461 |
aagttaaaggagaagtttgacataccttttgcatcaccagaatgtctttagctttggctttgggaggattgacatatcccatggcctttagagatcgact |
6669362 |
T |
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| Q |
201 |
tttcagtactttcttcaatgcattt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
6669361 |
tttcagtactttcttcaatgcattt |
6669337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 6778956 - 6779184
Alignment:
| Q |
1 |
atcagattacgcagacatatgtaatgtaaacattgtaaaagagaagtcagtaatgtcccaaatgcgttaatgcagcagggaatcagaatgtctttagatg |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
6778956 |
atcagattacgcagacatat--aatgtaaacattgtaaaagagaagtcagtaatgtcccgaatgcgttaatgcagcagggaatcagaatgtctttcgatg |
6779053 |
T |
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| Q |
101 |
aagttaaaggagaagtttgacataccttttgcatcaccagaatgtctttagctttggct------ttgggaggattgacatatcccatggcctttagaga |
194 |
Q |
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| T |
6779054 |
aagttaaaagagaaggttgacataccttttgcatcaccagaatgtctttagctttggctttggcattgggaggattgacatatcccatagcctttagaga |
6779153 |
T |
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| Q |
195 |
tcgacttttcagtactttcttcaatgcattt |
225 |
Q |
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| T |
6779154 |
tcgacttttcagtactttcttcaatgcattt |
6779184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 49882462 - 49882391
Alignment:
| Q |
119 |
gacataccttttgcatcaccagaatgtctttagctttggctttgggaggattgacatatcccatggccttta |
190 |
Q |
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| T |
49882462 |
gacatactttttgcatcaccagaatgtctttggcggtgtctttagaaggattggcatgtcccatggtcttta |
49882391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 36847282 - 36847326
Alignment:
| Q |
105 |
taaaggagaagtttgacataccttttgcatcaccagaatgtcttt |
149 |
Q |
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|||| |||||| | ||||||| ||||||||||||||||||||||| |
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| T |
36847282 |
taaaagagaagatagacatactttttgcatcaccagaatgtcttt |
36847326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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