View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_28 (Length: 224)
Name: NF1876_low_28
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 42034140 - 42033925
Alignment:
| Q |
1 |
cgagtatcatagctagctaggttctgtacaataataacataacataacataacacctctggcatatgtggctatagtgcgtgcctataaacatacgtacc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42034140 |
cgagtatcatagctagctaggttctgtacaataataacataacataacataacacctctggcatatgtggctatagtgcgtgcctataaaca--cgtacc |
42034043 |
T |
|
| Q |
101 |
ctctactctagtttttacacactcccggtttaattaattagtcaaaagatgctaatgttagtctacacaactatacacattatggttttaccaattgtgt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42034042 |
ctctactctagtttttacacactcccggtttaattaattagtcacaagatgctaatgttagtctacacaactatacacattatggttttaccaattgtgt |
42033943 |
T |
|
| Q |
201 |
aattgctatccaccctac |
218 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
42033942 |
aattgctatccaccctac |
42033925 |
T |
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