View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1876_low_29 (Length: 216)
Name: NF1876_low_29
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_29 |
 | |
|
| [»] chr5 (5 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 13648018 - 13648233
Alignment:
| Q |
1 |
catggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggaacaagaaaaaggattattaagtgagcttgaggaagggactagta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13648018 |
catggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaagtgagcttgaggaagggactcgta |
13648117 |
T |
|
| Q |
101 |
aggaaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacatacggcaattggtgcgtttttgacacataatgggtggtattcaacttt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
13648118 |
aggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacataatgggtggaattcaacttt |
13648217 |
T |
|
| Q |
201 |
ggacagtgtggtttgt |
216 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
13648218 |
ggaaagtgtggtttgt |
13648233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 13658549 - 13658761
Alignment:
| Q |
4 |
ggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggaacaagaaaaaggattattaagtgagcttgaggaagggactagtaagg |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||| ||| | |
|
|
| T |
13658549 |
ggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattgaaggagcttgaggaagggactactaaag |
13658648 |
T |
|
| Q |
104 |
aaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacatacggcaattggtgcgtttttgacacataatgggtggtattcaactttgga |
203 |
Q |
| |
|
| |||||| ||||||| |||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||| ||| ||| |||| |||||||| |
|
|
| T |
13658649 |
agaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgacacatagtggatggaattctactttgga |
13658748 |
T |
|
| Q |
204 |
cagtgtggtttgt |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13658749 |
gagtgtggtttgt |
13658761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 4 - 216
Target Start/End: Original strand, 13653076 - 13653288
Alignment:
| Q |
4 |
ggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggaacaagaaaaaggattattaagtgagcttgaggaagggactagtaagg |
103 |
Q |
| |
|
||||| ||||| ||||||||| || || ||||||||||| |||||||||| |||||||||| || || ||| || |||||||||||||||||||||| |
|
|
| T |
13653076 |
ggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaagactaataaaagaacttgaggaagggactagtaagg |
13653175 |
T |
|
| Q |
104 |
aaaaagggttgattgttgggtgggtcccacaagaggaagttttgtcacatacggcaattggtgcgtttttgacacataatgggtggtattcaactttgga |
203 |
Q |
| |
|
| ||||| |||||||| | ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| ||| |||| |||||||| |
|
|
| T |
13653176 |
agaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggtgcttttttgacacatagtggatggaattctactttgga |
13653275 |
T |
|
| Q |
204 |
cagtgtggtttgt |
216 |
Q |
| |
|
|||||||||||| |
|
|
| T |
13653276 |
gagtgtggtttgt |
13653288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 26672241 - 26672162
Alignment:
| Q |
130 |
ccacaagaggaagttttgtcacatacggcaattggtgcgtttttgacacataatgggtggtattcaactttggacagtgt |
209 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| | |||||||||||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
26672241 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26672162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 209
Target Start/End: Complemental strand, 26943839 - 26943760
Alignment:
| Q |
130 |
ccacaagaggaagttttgtcacatacggcaattggtgcgtttttgacacataatgggtggtattcaactttggacagtgt |
209 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||| | |||||||||||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
26943839 |
ccacaagaggaagttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgt |
26943760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University