View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1876_low_4 (Length: 629)

Name: NF1876_low_4
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1876_low_4
NF1876_low_4
[»] chr3 (8 HSPs)
chr3 (12-588)||(13761762-13762337)
chr3 (49-190)||(8857851-8857992)
chr3 (15-98)||(12528316-12528399)
chr3 (470-524)||(14483410-14483464)
chr3 (588-616)||(13762351-13762379)
chr3 (46-130)||(31662657-31662741)
chr3 (46-130)||(31933655-31933739)
chr3 (12-128)||(51108839-51108955)
[»] chr8 (1 HSPs)
chr8 (49-176)||(41342388-41342515)
[»] chr1 (2 HSPs)
chr1 (49-207)||(45636206-45636364)
chr1 (46-98)||(25596466-25596518)


Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 12 - 588
Target Start/End: Original strand, 13761762 - 13762337
Alignment:
Q  12 aatactcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttatttta 111  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13761762 aatactcataacatacgatgggattgcatgcagtacagatttaatcataacctcccgtcccgcttttgaaagacatttgctactccatgtgtttatttta 13761861  T
Q  112 tgccacacgcgatccttaacataagcgaagacagatgtacgattcctaccaatcatcgagggtaagcctagatacttacctgtgccaagaacagcctaaa 211  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13761862 tgccacacgcgatccttaacataagcgaaaacagatgtacgattcctaccaatcatcgagggtaagcctagatacttacctgtgccaagaacagcctgaa 13761961  T
Q  212 cacccatgatattggttatcgcatgttgtagggcgacagaaaccttgcgactgtaaaagatctcagacttgcggtaaactaatagcttgtcctgatgcag 311  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  13761962 cacccatgatattggttatcgcatgttgtagggtgacagaaaccttgcgactgtaaaagatctcagactt-cggtatactaatagcttgtcctgatgcag 13762060  T
Q  312 cttcataaggggcaagaatggattgcatgacatgcgcttgattttctgttgctttgaagaaaagaaaaccatcatttgcgaaaagcaagtgtgtaaccgg 411  Q
    ||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |    
T  13762061 cttcatatgtggcaagaatggattgcatgacatgagcttgattttctgttgctttgaagaaaagaaaaccatcatctgcgaaatgcaagtgtgtaaccag 13762160  T
Q  412 aggagcccctctacacacagaagtgccacatatgtcccccctagcctctgcacatctgattaaggaggaaagaccctaggcacaaataataaacaagtag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  13762161 aggagcccctctacacacagaagtgccacatatgtcccccctagcctctgcacgtctgattaaggaggaaagacccttggcacaaataataaacaagtag 13762260  T
Q  512 ggagaaagaggatttccttggcgcaaacctcaacccgaaataattggcccgactgactcaccgtttaccaagactga 588  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||    
T  13762261 ggagaaagaggatctccttggcgcaaacctcgacccgaaataattggcccgactgactcactgtttaccaagactga 13762337  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 190
Target Start/End: Complemental strand, 8857992 - 8857851
Alignment:
Q  49 gatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaacataagcgaagacagatg 148  Q
    |||||||||||||||||    ||| |||| ||||||||||| |||||||| || || ||||| | |||||  ||||| ||||| |||| ||| |||| |     
T  8857992 gatttaatcataacctcatgacccactttagaaagacatttactactccaagtattaattttctaccacagacgatctttaacgtaagagaaaacagctc 8857893  T
Q  149 tacgattcctaccaatcatcgagggtaagcctagatacttac 190  Q
    | | |||||||||||||||||| ||||| || ||||||||||    
T  8857892 tgcaattcctaccaatcatcgaaggtaaacccagatacttac 8857851  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 12528316 - 12528399
Alignment:
Q  15 actcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactcca 98  Q
    |||| ||||||| ||||| || || || | ||| || |||||||||||||||| |||||| |||||||| || |||||||||||    
T  12528316 actcataacataagatggtatagcttgaagtacggacttaatcataacctcccgtcccgcctttgaaaggcacttgctactcca 12528399  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 524
Target Start/End: Complemental strand, 14483464 - 14483410
Alignment:
Q  470 attaaggaggaaagaccctaggcacaaataataaacaagtagggagaaagaggat 524  Q
    |||| ||||||||||||||  |||||||||||||||||||| || ||||| ||||    
T  14483464 attagggaggaaagaccctccgcacaaataataaacaagtatggcgaaagcggat 14483410  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 588 - 616
Target Start/End: Original strand, 13762351 - 13762379
Alignment:
Q  588 aacagtttcgacacacaaagtcatccact 616  Q
    |||||||||||||||||||||||||||||    
T  13762351 aacagtttcgacacacaaagtcatccact 13762379  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 31662657 - 31662741
Alignment:
Q  46 acagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaa 130  Q
    |||||||||||||| ||||| |  |||||||| |||||||| || | |||||| |  || ||||| ||||| |||||||||||||    
T  31662657 acagatttaatcattacctcacgacccgctttcgaaagacactttccactccaggaattaattttctgccaaacgcgatccttaa 31662741  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 31933739 - 31933655
Alignment:
Q  46 acagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaa 130  Q
    |||||||||||||| ||||| |  |||||||| |||||||| || | |||||| |  || ||||| ||||| |||||||||||||    
T  31933739 acagatttaatcattacctcacgacccgctttcgaaagacactttccactccaggaattaattttctgccaaacgcgatccttaa 31933655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 51108955 - 51108839
Alignment:
Q  12 aatactcctaacatacgatgggattgcatgcattacagatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttatttta 111  Q
    ||||||| | |||||||| ||||| || || |  || ||||||||||| || || || || ||||| ||||||||||| |||||||| |  || ||||||    
T  51108955 aatactcatgacatacgaagggatagcttgaaggaccgatttaatcatgacttcacaccctgctttggaaagacatttactactccaagaattgatttta 51108856  T
Q  112 tgccacacgcgatcctt 128  Q
    |||||||| | ||||||    
T  51108855 tgccacactctatcctt 51108839  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 176
Target Start/End: Complemental strand, 41342515 - 41342388
Alignment:
Q  49 gatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaacataagcgaagacagatg 148  Q
    ||||| ||||||||||| |  |||||||| || || |||||||| ||||| || || ||||| |||||||||||||| |||||||||| ||| |||| ||    
T  41342515 gattttatcataacctcacgacccgctttagagaggcatttgctgctccaagtattgattttctgccacacgcgatctttaacataagagaaaacagctg 41342416  T
Q  149 tacgattcctaccaatcatcgagggtaa 176  Q
    | |||||||| ||||||||||| |||||    
T  41342415 tgcgattcctgccaatcatcgatggtaa 41342388  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 45636364 - 45636206
Alignment:
Q  49 gatttaatcataacctcccatcccgcttttgaaagacatttgctactccatgtgtttattttatgccacacgcgatccttaacataagcgaagacagatg 148  Q
    ||||| ||||||||||| |  |||||||| || || |||||||| ||||| || || ||||| |||||||||||||| ||||| |||| ||| ||||  |    
T  45636364 gattttatcataacctcacgacccgctttagagaggcatttgctgctccaagtattgattttctgccacacgcgatctttaacgtaagagaaaacagccg 45636265  T
Q  149 tacgattcctaccaatcatcgagggtaagcctagatacttacctgtgccaagaacagcc 207  Q
    |  | || || ||||||||||| ||||| || | |||||| || ||||| | |||||||    
T  45636264 tgtggtttctgccaatcatcgatggtaaacccaaatacttgcccgtgcctaaaacagcc 45636206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 25596466 - 25596518
Alignment:
Q  46 acagatttaatcataacctcccatcccgcttttgaaagacatttgctactcca 98  Q
    |||||||| ||||||||||| |  || |||||||| |||||||||||||||||    
T  25596466 acagatttgatcataacctcacgccctgcttttgacagacatttgctactcca 25596518  T

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