View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1876_low_8 (Length: 475)
Name: NF1876_low_8
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1876_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 214 - 355
Target Start/End: Original strand, 7339104 - 7339244
Alignment:
| Q |
214 |
ctctgagaattgaaacctacaaggaccacttcttaggtcagcaatacaaggacattcaagagctttttgatccatttcctcaacagactgaaaaaattca |
313 |
Q |
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| T |
7339104 |
ctctgagaattgaaacccacaaggaccacttcttaagtcagcaatacaaggacattcaagagctttctgagccatttcctcaacattctaaaaaaatt-a |
7339202 |
T |
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| Q |
314 |
acaaaattccaattttttattgatctgtttattcacccaact |
355 |
Q |
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| T |
7339203 |
atcgaattccaatttttcattgatttgttcattcacccaact |
7339244 |
T |
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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 380 - 460
Target Start/End: Original strand, 7339593 - 7339673
Alignment:
| Q |
380 |
caaacaaaccttggtgttttggtttccataagctgcagcttctgaaataaatgaacagaaacaaaattgaactgagatttc |
460 |
Q |
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| T |
7339593 |
caaacaaacctcagtgttttggcttccataagctgcagcttctgaaataaatgaacagaaacaaaattgaagtgagatttc |
7339673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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