View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1876_low_9 (Length: 452)

Name: NF1876_low_9
Description: NF1876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1876_low_9
NF1876_low_9
[»] chr6 (18 HSPs)
chr6 (99-295)||(2986761-2986957)
chr6 (301-427)||(2987015-2987142)
chr6 (99-295)||(2928127-2928318)
chr6 (130-295)||(2935663-2935828)
chr6 (103-260)||(2952983-2953140)
chr6 (1-97)||(3002848-3002956)
chr6 (301-432)||(2985959-2986089)
chr6 (1-57)||(2954971-2955027)
chr6 (1-57)||(2952839-2952895)
chr6 (1-57)||(2986616-2986672)
chr6 (3-57)||(2974890-2974944)
chr6 (158-207)||(2955324-2955373)
chr6 (103-175)||(2955220-2955292)
chr6 (16-57)||(2935508-2935549)
chr6 (96-141)||(3002775-3002820)
chr6 (1-53)||(2965405-2965457)
chr6 (163-265)||(2985775-2985878)
chr6 (18-55)||(2983761-2983798)
[»] scaffold0024 (5 HSPs)
scaffold0024 (96-293)||(43204-43401)
scaffold0024 (103-204)||(33991-34092)
scaffold0024 (1-57)||(34180-34236)
scaffold0024 (301-388)||(33739-33829)
scaffold0024 (301-350)||(43082-43131)
[»] chr7 (3 HSPs)
chr7 (129-295)||(3340056-3340223)
chr7 (1-57)||(3339885-3339941)
chr7 (367-401)||(3340362-3340396)
[»] chr8 (1 HSPs)
chr8 (262-292)||(7473110-7473140)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 2986761 - 2986957
Alignment:
Q  99 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 198  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||    
T  2986761 tgagtttaatgtaacatgatttatgttttgataccttaattgaaaagtgatttatcattattcaagttgtttggataatttaaatcaaaattatttttga 2986860  T
Q  199 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 295  Q
     |||||||| |   || |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  2986861 atgtgaattgacgaaatttagtttatataattgaaaaagaagaggaacatcgataaaataagagagtgcaacacttgagtaaatggtaaatttatta 2986957  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 301 - 427
Target Start/End: Original strand, 2987015 - 2987142
Alignment:
Q  301 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagagtttccac-gacaagttgatttagtacataactcacgtttgatcttgtgaa 399  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  2987015 tccaaccttgaatcgaatttggaacaacaatcacttaaaattattaacagtttccattgacaagttgatttagtacataactcacgtttgatcttgtgaa 2987114  T
Q  400 cttacgtcgcatgtcttccaactcacaa 427  Q
    ||||||||   |||||||||||||||||    
T  2987115 cttacgtcaagtgtcttccaactcacaa 2987142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 99 - 295
Target Start/End: Original strand, 2928127 - 2928318
Alignment:
Q  99 tgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttga 198  Q
    |||||||||  ||| |||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  2928127 tgagtttaagttaaggtgacttatgttttgataccttgattgaaaagtgatttttcataattcaagttgtttagataatttagatcaaaattacttttga 2928226  T
Q  199 gtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 295  Q
    ||||||||| |   ||| | |||| ||||||| |||||||||||| || |  | ||||||||||||||     ||||||||||||||||||||||||    
T  2928227 gtgtgaatttaccaaaactggtttgaatgattaaaaaagaagaggcacgttaataaaataagagagtg-----cttgagtaaatggtaaattgatta 2928318  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 130 - 295
Target Start/End: Original strand, 2935663 - 2935828
Alignment:
Q  130 taccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgat 229  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| |||||  |||||| |||||||| ||  |||   |||| ||||||    
T  2935663 taccttgattgaaaagtgatttttcataattcatgttgtttggataatttagatcaaaattgtttttgaatgtgaatttatcaaaacgcgtttgaatgat 2935762  T
Q  230 tgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 295  Q
    | ||||||||||||||| || | ||||||||| | || ||||||||| ||||||||||||||||||    
T  2935763 taaaaaagaagaggaacgtcaataaaataagacaatgaaacacttgactaaatggtaaattgatta 2935828  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 103 - 260
Target Start/End: Original strand, 2952983 - 2953140
Alignment:
Q  103 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 202  Q
    ||||||||| | ||||||||| ||  ||| ||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||| || ||    
T  2952983 tttaatgtatcatgatttatgtttggatatcttgattgaaaagtgatttttcataattcaagttgtttggagaatttagatcaaaattacttttaagagt 2953082  T
Q  203 gaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataag 260  Q
    ||||| ||  ||| |||||| ||||||| |||||||||||||||||| | ||||||||    
T  2953083 gaatttatcaaaactagtttgaatgattaaaaaagaagaggaacatccataaaataag 2953140  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 3002956 - 3002848
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaat------------gtgtgtttggttccacggtgataataattgttt 88  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||            ||| |||||||||||||||||||| ||||||||    
T  3002956 gtctgatagtgtggttggcaaaatctaggggtgcaggtagaaacttcaaactaatgtcgtgtctcgcgtgcgtttggttccacggtgataacaattgttt 3002857  T
Q  89 ttgaatgaa 97  Q
    |||||||||    
T  3002856 ttgaatgaa 3002848  T

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Target: chr6; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 432
Target Start/End: Original strand, 2985959 - 2986089
Alignment:
Q  301 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagagtttccacgacaagttgatttagtacataactcacgtttgatcttgtgaac 400  Q
    ||||||||| |||| | ||| ||||||||||||| |||||||| |||||||  |||  |||| ||||||||| ||||||||| ||||||| | | |||||    
T  2985959 tccaaccttaaatccagtttggaacaacaatcacataaaattagttagagtccccaa-acaatttgatttagaacataactctcgtttgaccctatgaac 2986057  T
Q  401 ttacgtcgcatgtcttccaactcacaaccaaa 432  Q
    |||||||   || |||||||||||||||||||    
T  2986058 ttacgtcaagtgccttccaactcacaaccaaa 2986089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2954971 - 2955027
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||    
T  2954971 gtctgatagtgtggttggcaaaatctagggttgcaggtagaaactcctaactaatgt 2955027  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2952839 - 2952895
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||||||| | |||||||||||||||||||||||||||| ||| |||||||||    
T  2952839 gtctgatagtgttgttggcaaaatctaggggtgcaggtagaaattcctaactaatgt 2952895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2986616 - 2986672
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  2986616 gtctgatagtgtggttggcaaaatctaggggtgcaactagaaactcctaactaatgt 2986672  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 2974890 - 2974944
Alignment:
Q  3 ctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||||| | ||| |||||||||||||||||||||||||||| |||||||||    
T  2974890 ctgatagtgttgttggaaaaatctaggggtgcaggtagaaactcctaactaatgt 2974944  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 2955324 - 2955373
Alignment:
Q  158 attcaagttgtttggataatttagatccaaattacttttgagtgtgaatt 207  Q
    ||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  2955324 attcaagttgtttggataatttagatcaaaattacttctgaatgtgaatt 2955373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 2955220 - 2955292
Alignment:
Q  103 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggata 175  Q
    ||||||||||| | ||||||| |   |||||||||||||||||||||||||||| ||||||||  ||||||||    
T  2955220 tttaatgtaacataatttatgttaggataccttaattgaaaagtgatttttcataattcaagtgttttggata 2955292  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 2935508 - 2935549
Alignment:
Q  16 tggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||||||||||||||||||||||||||  |||||||||    
T  2935508 tggcaaaatctaggggtgcaggtagaaactcataactaatgt 2935549  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 3002820 - 3002775
Alignment:
Q  96 aaatgagtttaatgtaacgtgatttatgatttaataccttaattga 141  Q
    ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  3002820 aaatgagtttagtgtaacatgatttatgttttaataccttaattga 3002775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 2965405 - 2965457
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaacta 53  Q
    |||||||||||| | ||||||||||||||| | |||||||||||||| |||||    
T  2965405 gtctgatagtgttgttggcaaaatctagggtttcaggtagaaactcctaacta 2965457  T

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Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 2985775 - 2985878
Alignment:
Q  163 agttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatgattgaaaa-agaagaggaacatcgacaaaataaga 261  Q
    |||||||||| ||||||| ||| |||||||| ||||||||| ||| |   ||| |||||| ||||||| |||| ||||||||| |||| |  ||||||||    
T  2985775 agttgtttgggtaatttaaatcgaaattactcttgagtgtgcatttaccaaaactagtttgaatgattaaaaaaagaagaggagcatcaatcaaataaga 2985874  T
Q  262 gagt 265  Q
    ||||    
T  2985875 gagt 2985878  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 2983761 - 2983798
Alignment:
Q  18 gcaaaatctaggggtgcaggtagaaactccaaactaat 55  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  2983761 gcaaaatctaggggtgcaggtaaaaactcctaactaat 2983798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 106; Significance: 7e-53; HSPs: 5)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 96 - 293
Target Start/End: Complemental strand, 43401 - 43204
Alignment:
Q  96 aaatgagtttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttt 195  Q
    |||||| |||||| |||  ||||||||| || |||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||| |||| |||||    
T  43401 aaatgactttaatataatatgatttatgtttgaatatcttgattgaaaaatgatttttcataattcaagttgtttggataattttgatcgaaatgacttt 43302  T
Q  196 tgagtgtgaattaatacaaattagtttaaatgattgaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgat 293  Q
    | |||||||||| ||  ||| |||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||| |||||||    
T  43301 taagtgtgaatttatcaaaactagtttgaatgattgaaaaagaagaggaacatcaataaaataagagactgcaacacttgagtaaatggtgaattgat 43204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 34092 - 33991
Alignment:
Q  103 tttaatgtaacgtgatttatgatttaataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgt 202  Q
    ||||||||||| ||||||||  ||  ||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||    
T  34092 tttaatgtaacatgatttatatttggatagcttgattgaaaagtgatttttcataattcaagttatttggataatttagatcaaaattacttttgagtgt 33993  T
Q  203 ga 204  Q
    ||    
T  33992 ga 33991  T

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Target: scaffold0024; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 34236 - 34180
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||||||| | |||||||||||| ||||||| ||||||||||| || ||||||    
T  34236 gtctgatagtgttgttggcaaaatctacgggtgcaagtagaaactcctaagtaatgt 34180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 33829 - 33739
Alignment:
Q  301 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagagtttccacgacaagttgattt----agtacataactcacgttt 388  Q
    ||||||||| |||||||||| ||||||||||||| |||||| ||  ||||  ||||  ||||||||||||    ||||||||||||||||||    
T  33829 tccaaccttaaatcgattttggaacaacaatcacgtaaaatgataaagagcatcca-aacaagttgatttattaagtacataactcacgttt 33739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 43131 - 43082
Alignment:
Q  301 tccaaccttgaatcgattttcgaacaacaatcacttaaaattatttagag 350  Q
    ||||||||| ||| |||||| ||||||||||||| |||||||||| ||||    
T  43131 tccaaccttaaattgattttggaacaacaatcacataaaattattaagag 43082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 129 - 295
Target Start/End: Original strand, 3340056 - 3340223
Alignment:
Q  129 ataccttaattgaaaagtgatttttcattattcaagttgtttggataatttagatccaaattacttttgagtgtgaattaatacaaattagtttaaatga 228  Q
    ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||| ||  ||| | |||| |||||    
T  3340056 ataccttgattgaaaagtaaattttcataattcaagttgtttggataatttagattaaaattacttttgagtgtgaatttatcaaaactggttttaatga 3340155  T
Q  229 tt-gaaaaagaagaggaacatcgacaaaataagagagtgcaacacttgagtaaatggtaaattgatta 295  Q
    ||  |||||||| |||||| || | |||||||||||||||||||||||| |||||| |||||||||||    
T  3340156 ttaaaaaaagaaaaggaacgtcaataaaataagagagtgcaacacttgactaaatgataaattgatta 3340223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3339885 - 3339941
Alignment:
Q  1 gtctgatagtgtggatggcaaaatctaggggtgcaggtagaaactccaaactaatgt 57  Q
    |||||||| | ||| |||||||||||||||||||| ||||||||||| |||||||||    
T  3339885 gtctgataatatggttggcaaaatctaggggtgcatgtagaaactcctaactaatgt 3339941  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 401
Target Start/End: Original strand, 3340362 - 3340396
Alignment:
Q  367 atttagtacataactcacgtttgatcttgtgaact 401  Q
    |||||||||||||||||||||||||| ||||||||    
T  3340362 atttagtacataactcacgtttgatcatgtgaact 3340396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 7473110 - 7473140
Alignment:
Q  262 gagtgcaacacttgagtaaatggtaaattga 292  Q
    |||||||||||||||||||||||||||||||    
T  7473110 gagtgcaacacttgagtaaatggtaaattga 7473140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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