View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18770_high_1 (Length: 702)
Name: NF18770_high_1
Description: NF18770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18770_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Original strand, 49208907 - 49209332
Alignment:
| Q |
19 |
aatgtcacatatattccaatataatccaaactaattaagcttttacttctctttgtttggttactactaatatattctttgatttcacttagttgagtga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
49208907 |
aatgtcacatatattccaatataatccaaactaattaagcttttacttctctttgtttggttactactaatatatcctttgatttcacttagttgagtga |
49209006 |
T |
|
| Q |
119 |
tgaagaggtaaaatggtttataagagttgtttgtgtgtgtaaaaactaaagaaaaaggtttagagtgagttagttaatgcaacaatatatatagtatagt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49209007 |
tgaagaggtaaaatggtttataagagttgtttgtgtgtgtaaaaactaaagaaaaaggtttagagtgagttagttaatgcaacaatatatatagtatagt |
49209106 |
T |
|
| Q |
219 |
acagggatgaatgaaataacacataaaacagttatgaccgttgatttgagagagagtgatgaagattgaattcaagtgtgatcgatgtgatatgatgaaa |
318 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49209107 |
atagggatgaatgaaataacacataaaacagttatgaccgttgatttgagagagagtgatgaagattgaattcaagtgtgatcgatgtgatatgatgaaa |
49209206 |
T |
|
| Q |
319 |
tgaatgagttggaatgctttttggcatgcctttgtctttgttgtgtactatgagggtggaacactcatcattctgtcattttcaaatcttccacccacgc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49209207 |
tgaatgagttggaatgctttttggcatgcctttgtctttgttgtgtactatgagggtggaacactcatcattctgtcattttcaaatcttccacccacgc |
49209306 |
T |
|
| Q |
419 |
atcttcactttttctatataattata |
444 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
49209307 |
atcttcactttttctatataattata |
49209332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 513 - 697
Target Start/End: Original strand, 49209401 - 49209585
Alignment:
| Q |
513 |
aagtgtttttgtacacaaaaccaatttaaataaacttgattttgtaaaaagagtatagtatgaaaatgagtttataagtgacatgcattcctaatcttac |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49209401 |
aagtgtttttgtacacaaaaccaatttaaataaacttgattttgtaaaaagagtatagtatgaaaatgagtttataagtgacatgcattcctaatcttac |
49209500 |
T |
|
| Q |
613 |
agtatattgatttctcttgagatattttttactaaataaaaggcttatagtgatgcaacttattatctgtttgtcttcttctcac |
697 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49209501 |
agtatactgatttctcttgagatattttttactaaataaaagacttatagtgatgcaacttattatctgtttgtcttcttctcac |
49209585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University